PLAZA 3.0 Dicots gene overview : AL6G10080

Gene: AL6G10080 (Arabidopsis lyrata)

Overview

Gene Identifier: AL6G10080
Transcript Identifier: AL6G10080.1
Gene Type: Coding gene
Location: scaffold_6 : 4128958-4135075 : positive

Family

Gene family: HOM03D000135
(738 genes in 31 species)
specific family
Subfamily: ORTHO03D010539
(25 genes in 21 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): uncharacterized protein At4g01020, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	487868
GeneName	g487868
id	PAC:16065240

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003676	IEA	Genome Project	nucleic acid binding
GO:0004386	IEA	Genome Project	helicase activity
GO:0005524	IEA	Genome Project	ATP binding
GO:0008270	IEA	Genome Project	zinc ion binding
GO:0008026	IEA	Genome Project	ATP-dependent helicase activity
GO:0005515	IEA	InterPro	protein binding
GO:0046872	IEA	InterPro	metal ion binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000135
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000135
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000135
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03D000135
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000135
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000135
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000135
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000135
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000135
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000135
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000135
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03D000135
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000135
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000135
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000135
GO:0016887	IEA	PLAZA Homology	ATPase activity	HOM03D000135
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03D000135
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000135
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000135
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000135
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000135
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000135
GO:0070035	IEA	PLAZA Homology	purine NTP-dependent helicase activity	HOM03D000135

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001841	Zinc finger, RING-type
IPR011709	Domain of unknown function DUF1605
IPR007502	Helicase-associated domain
IPR017907	Zinc finger, RING-type, conserved site
IPR002867	Zinc finger, C6HC-type
IPR001650	Helicase, C-terminal
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR002464	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
IPR007087	Zinc finger, C2H2
IPR018957	Zinc finger, C3HC4 RING-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.