PLAZA 3.0 Dicots gene overview : AL6G08900

Gene: AL6G08900 (Arabidopsis lyrata)

Overview

Gene Identifier: AL6G08900
Transcript Identifier: AL6G08900.1
Gene Type: Coding gene
Location: scaffold_6 : 3687767-3688723 : negative

Family

Gene family: HOM03D119789
(orphan gene)
specific family

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Descriptions

No default description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	892834
GeneName	g892834
id	PAC:16052072

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	Genome Project	DNA binding
GO:0003713	IEA	Genome Project	transcription coactivator activity

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR009044	ssDNA-binding transcriptional regulator
IPR003173	Transcriptional coactivator p15 (PC4)

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.