PLAZA 3.0 Dicots gene overview : AL5G34100

Gene: AL5G34100 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G34100
Transcript Identifier: AL5G34100.1
Gene Type: Coding gene
Location: scaffold_5 : 21013519-21014808 : positive

Family

Gene family: HOM03D000081
(1112 genes in 29 species)
specific family
Subfamily: ORTHO03D000536
(79 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine): Gibberellin receptor GID1C

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	486805
GeneName	g486805
id	PAC:16051434

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	Genome Project	metabolic process
GO:0010476	ISO	PLAZA Integrative Orthology	gibberellin mediated signaling pathway	AT3G63010
GO:0009739	ISO	PLAZA Integrative Orthology	response to gibberellin stimulus	AT3G63010
GO:0048444	ISO	PLAZA Integrative Orthology	floral organ morphogenesis	AT3G63010
GO:0009939	ISO	PLAZA Integrative Orthology	positive regulation of gibberellic acid mediated signaling pathway	AT3G63010
GO:0010325	ISO	PLAZA Integrative Orthology	raffinose family oligosaccharide biosynthetic process	AT3G63010

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016787	IEA	Genome Project	hydrolase activity
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G63010
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000081

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002168	Lipase, GDXG, active site
IPR013094	Alpha/beta hydrolase fold-3

Mapman id	Description
17.6.2	hormone metabolism.gibberelin.signal transduction

No SignalP domains detected for this gene.