PLAZA 3.0 Dicots gene overview : AL5G25190

Gene: AL5G25190 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G25190
Transcript Identifier: AL5G25190.1
Gene Type: Coding gene
Location: scaffold_5 : 17315190-17317400 : negative

Family

Gene family: HOM03D000100
(999 genes in 31 species)
specific family
Subfamily: ORTHO03D000396
(92 genes in 28 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description (AnnoMine): Pleiotropic ABC efflux transporter of multiple drugs

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	938438
GeneName	g938438
id	PAC:16059062

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0016887	IEA	Genome Project	ATPase activity
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000100
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000100
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000100
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000100
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000100
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000100
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000100
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000100
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000100
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000100
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000100
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000100
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000100
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000100
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000100
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000100
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000100
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000100
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000100
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000100
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000100
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000100

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	IEA	Genome Project	membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003439	ABC transporter-like
IPR003593	AAA+ ATPase domain
IPR013525	ABC-2 type transporter
IPR017871	ABC transporter, conserved site
IPR027417	P-loop containing nucleoside triphosphate hydrolase

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.