PLAZA 3.0 Dicots gene overview : AL5G25090

Gene: AL5G25090 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G25090
Transcript Identifier: AL5G25090.1
Gene Type: Coding gene
Location: scaffold_5 : 17276932-17279129 : positive

Family

Gene family: HOM03D004399
(45 genes in 29 species)
specific family
Subfamily: ORTHO03D004150
(36 genes in 27 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): TONNEAU 1b

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	938428
GeneName	g938428
id	PAC:16049209

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0034453	IEA	Genome Project	microtubule anchoring
GO:0030865	ISO	PLAZA Integrative Orthology	cortical cytoskeleton organization	AT3G55000 AT3G55005
GO:0000913	ISO	PLAZA Integrative Orthology	preprophase band assembly	AT3G55000 AT3G55005
GO:0000226	ISO	PLAZA Integrative Orthology	microtubule cytoskeleton organization	AT3G55000 AT3G55005

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005815	IEA	Genome Project	microtubule organizing center
GO:0005813	IEA	Genome Project	centrosome
GO:0030981	ISO	PLAZA Integrative Orthology	cortical microtubule cytoskeleton	AT3G55000 AT3G55005
GO:0030863	ISO	PLAZA Integrative Orthology	cortical cytoskeleton	AT3G55000
GO:0009574	ISO	PLAZA Integrative Orthology	preprophase band	AT3G55000
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT3G55000
GO:0005938	ISO	PLAZA Integrative Orthology	cell cortex	AT3G55000
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT3G55000 AT3G55005

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006594	LisH dimerisation motif
IPR018993	FGFR1 oncogene partner (FOP), N-terminal dimerisation domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.