PLAZA 3.0 Dicots gene overview : AL5G24860

Gene: AL5G24860 (Arabidopsis lyrata)

Overview

Gene Identifier: AL5G24860
Transcript Identifier: AL5G24860.1
Gene Type: Coding gene
Location: scaffold_5 : 17157343-17159854 : positive

Family

Gene family: HOM03D000558
(237 genes in 29 species)
specific family
Subfamily: ORTHO03D001219
(55 genes in 24 species)
specific family

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Descriptions

Description (AnnoMine): trypsin inhibitor heavy chain H3

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	324008
GeneName	g324008
id	PAC:16044142

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0010197	ISO	PLAZA Integrative Orthology	polar nucleus fusion	AT4G37890

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	Genome Project	protein binding
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Integrative Orthology	plasma membrane	AT5G49665 AT5G60710 AT4G37890 AT1G08050
GO:0009506	ISO	PLAZA Integrative Orthology	plasmodesma	AT4G37890

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002035	von Willebrand factor, type A
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.