Gene: AL5G17280 (Arabidopsis lyrata)

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Gene Identifier
AL5G17280
Transcript Identifier
AL5G17280.1
Gene Type
Coding gene
Location
scaffold_5 : 13802192-13807102 : positive

Family

Gene family
HOM03D000357
(342 genes in 31 species)
specific family
Subfamily
ORTHO03D006637
(32 genes in 22 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Endothelial zinc finger protein induced by tumor necrosis factor alpha
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid485204
GeneNameg485204
idPAC:16048154

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048366ISOPLAZA Integrative Orthologyleaf developmentAT3G48430
GO:0033169ISOPLAZA Integrative Orthologyhistone H3-K9 demethylationAT3G48430
GO:0009741ISOPLAZA Integrative Orthologyresponse to brassinosteroidAT3G48430
GO:0009826ISOPLAZA Integrative Orthologyunidimensional cell growthAT3G48430
GO:0035067ISOPLAZA Integrative Orthologynegative regulation of histone acetylationAT3G48430
GO:0010228ISOPLAZA Integrative Orthologyvegetative to reproductive phase transition of meristemAT3G48430

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEAGenome Projectzinc ion binding
GO:0005515IEAGenome Projectprotein binding
GO:0003676IEAInterPronucleic acid binding
GO:0046872IEAInterPrometal ion binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0005634ISOPLAZA Integrative OrthologynucleusAT3G48430

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007087Zinc finger, C2H2
IPR003349Transcription factor jumonji, JmjN
IPR015880Zinc finger, C2H2-like
IPR003347JmjC domain
IPR013087Zinc finger C2H2-type/integrase DNA-binding domain

Mapman id Description
27.3.57RNA.regulation of transcription.JUMONJI family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBC2H2
PlantTFDBC2H2