PLAZA 3.0 Dicots gene overview : AL4G34020

Gene: AL4G34020 (Arabidopsis lyrata)

Overview

Gene Identifier: AL4G34020
Transcript Identifier: AL4G34020.1
Gene Type: Coding gene
Location: scaffold_4 : 22376096-22377281 : negative

Family

Gene family: HOM03D000071
(1215 genes in 31 species)
specific family
Subfamily: ORTHO03D018451
(8 genes in 6 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): E2-23 kDa

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	483748
GeneName	g483748
id	PAC:16059234

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006511	ISO	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	AT2G46030

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016881	IEA	Genome Project	acid-amino acid ligase activity
GO:0004842	ISO	PLAZA Integrative Orthology	ubiquitin-protein ligase activity	AT2G46030
GO:0016874	IEA	PLAZA Homology	ligase activity	HOM03D000071
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000071
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000071

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016135	Ubiquitin-conjugating enzyme/RWD-like
IPR023313	Ubiquitin-conjugating enzyme, active site
IPR000608	Ubiquitin-conjugating enzyme, E2

Mapman id	Description
29.5.11.3	protein.degradation.ubiquitin.E2

No SignalP domains detected for this gene.