PLAZA 3.0 Dicots gene overview : AL4G31990

Gene: AL4G31990 (Arabidopsis lyrata)

Overview

Gene Identifier: AL4G31990
Transcript Identifier: AL4G31990.1
Gene Type: Coding gene
Location: scaffold_4 : 21588843-21591019 : negative

Family

Gene family: HOM03D003484
(52 genes in 31 species)
specific family
Subfamily: ORTHO03D003767
(37 genes in 31 species)
specific family

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Descriptions

Description (AnnoMine): Cytoplasmic tRNA 2-thiolation protein 1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	483552
GeneName	g483552
id	PAC:16063286

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0034227	IEA	InterPro	tRNA thio-modification
GO:0080157	ISO	PLAZA Integrative Orthology	regulation of plant-type cell wall organization or biogenesis	AT2G44270
GO:0000302	ISO	PLAZA Integrative Orthology	response to reactive oxygen species	AT2G44270

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000049	IEA	InterPro	tRNA binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000541	tRNA 2-thiolation protein
IPR011063	tRNA(Ile)-lysidine/2-thiocytidine synthase
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.