PLAZA 3.0 Dicots gene overview : AL4G07280

Gene: AL4G07280 (Arabidopsis lyrata)

Overview

Gene Identifier: AL4G07280
Transcript Identifier: AL4G07280.1
Gene Type: Coding gene
Location: scaffold_4 : 5030398-5031057 : positive

Family

Gene family: HOM03D000089
(1046 genes in 29 species)
specific family
Subfamily: ORTHO03D027970
(5 genes in 5 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): responsive transcription factor ERF042

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	481434
GeneName	g481434
id	PAC:16041185

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006355	IEA	Genome Project	regulation of transcription, DNA-dependent
GO:0010468	IEA	PLAZA Homology	regulation of gene expression	HOM03D000089
GO:0006807	IEA	PLAZA Homology	nitrogen compound metabolic process	HOM03D000089
GO:0010467	IEA	PLAZA Homology	gene expression	HOM03D000089
GO:0051171	IEA	PLAZA Homology	regulation of nitrogen compound metabolic process	HOM03D000089
GO:0051252	IEA	PLAZA Homology	regulation of RNA metabolic process	HOM03D000089
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03D000089
GO:0019222	IEA	PLAZA Homology	regulation of metabolic process	HOM03D000089
GO:0034641	IEA	PLAZA Homology	cellular nitrogen compound metabolic process	HOM03D000089
GO:0019219	IEA	PLAZA Homology	regulation of nucleobase-containing compound metabolic process	HOM03D000089
GO:0034645	IEA	PLAZA Homology	cellular macromolecule biosynthetic process	HOM03D000089
GO:0050789	IEA	PLAZA Homology	regulation of biological process	HOM03D000089
GO:0009889	IEA	PLAZA Homology	regulation of biosynthetic process	HOM03D000089
GO:0018130	IEA	PLAZA Homology	heterocycle biosynthetic process	HOM03D000089
GO:0019438	IEA	PLAZA Homology	aromatic compound biosynthetic process	HOM03D000089
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03D000089
GO:0046483	IEA	PLAZA Homology	heterocycle metabolic process	HOM03D000089
GO:0016070	IEA	PLAZA Homology	RNA metabolic process	HOM03D000089
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000089
GO:0044271	IEA	PLAZA Homology	cellular nitrogen compound biosynthetic process	HOM03D000089
GO:0065007	IEA	PLAZA Homology	biological regulation	HOM03D000089
GO:0010556	IEA	PLAZA Homology	regulation of macromolecule biosynthetic process	HOM03D000089
GO:0006139	IEA	PLAZA Homology	nucleobase-containing compound metabolic process	HOM03D000089
GO:0032774	IEA	PLAZA Homology	RNA biosynthetic process	HOM03D000089
GO:0006725	IEA	PLAZA Homology	cellular aromatic compound metabolic process	HOM03D000089
GO:1901576	IEA	PLAZA Homology	organic substance biosynthetic process	HOM03D000089
GO:0090304	IEA	PLAZA Homology	nucleic acid metabolic process	HOM03D000089
GO:0080090	IEA	PLAZA Homology	regulation of primary metabolic process	HOM03D000089
GO:2001141	IEA	PLAZA Homology	regulation of RNA biosynthetic process	HOM03D000089
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03D000089
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000089
GO:0009058	IEA	PLAZA Homology	biosynthetic process	HOM03D000089
GO:0009059	IEA	PLAZA Homology	macromolecule biosynthetic process	HOM03D000089
GO:0006351	IEA	PLAZA Homology	transcription, DNA-templated	HOM03D000089
GO:2000112	IEA	PLAZA Homology	regulation of cellular macromolecule biosynthetic process	HOM03D000089
GO:0060255	IEA	PLAZA Homology	regulation of macromolecule metabolic process	HOM03D000089
GO:0031323	IEA	PLAZA Homology	regulation of cellular metabolic process	HOM03D000089
GO:1901360	IEA	PLAZA Homology	organic cyclic compound metabolic process	HOM03D000089
GO:0031326	IEA	PLAZA Homology	regulation of cellular biosynthetic process	HOM03D000089
GO:1901362	IEA	PLAZA Homology	organic cyclic compound biosynthetic process	HOM03D000089
GO:0034654	IEA	PLAZA Homology	nucleobase-containing compound biosynthetic process	HOM03D000089
GO:0050794	IEA	PLAZA Homology	regulation of cellular process	HOM03D000089
GO:0008152	IEA	PLAZA Homology	metabolic process	HOM03D000089
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000089
GO:0044249	IEA	PLAZA Homology	cellular biosynthetic process	HOM03D000089

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003700	IEA	Genome Project	sequence-specific DNA binding transcription factor activity
GO:0003677	IEA	InterPro	DNA binding
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000089
GO:0003676	IEA	PLAZA Homology	nucleic acid binding	HOM03D000089
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000089
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000089
GO:0001071	IEA	PLAZA Homology	nucleic acid binding transcription factor activity	HOM03D000089

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001471	AP2/ERF domain
IPR016177	DNA-binding domain

Mapman id	Description
27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	AP2-EREBP
PlantTFDB	ERF