Gene: AL3G12920 (Arabidopsis lyrata)

Overview top

Gene Identifier
AL3G12920
Transcript Identifier
AL3G12920.1
Gene Type
Coding gene
Location
scaffold_3 : 5001489-5003074 : negative

Family

Gene family
HOM03D000239
(447 genes in 29 species)
specific family
Subfamily
ORTHO03D001728
(47 genes in 26 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
Basic 30 kDa endochitinase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid318019
GeneNameg318019
idPAC:16050722

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006032IEAGenome Projectchitin catabolic process
GO:0016998IEAGenome Projectcell wall macromolecule catabolic process
GO:0050832ISOPLAZA Integrative Orthologydefense response to fungusOS06G51060 OS06G51050 OS03G30470 AT3G12500
GO:0006040ISOPLAZA Integrative Orthologyamino sugar metabolic processOS03G30470
GO:0009871ISOPLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathwayAT3G12500
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT3G12500
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000239
GO:0006030IEAPLAZA Homologychitin metabolic processHOM03D000239
GO:1901575IEAPLAZA Homologyorganic substance catabolic processHOM03D000239
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000239
GO:0046348IEAPLAZA Homologyamino sugar catabolic processHOM03D000239
GO:0071554IEAPLAZA Homologycell wall organization or biogenesisHOM03D000239
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000239
GO:1901565IEAPLAZA Homologyorganonitrogen compound catabolic processHOM03D000239
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03D000239
GO:0044036IEAPLAZA Homologycell wall macromolecule metabolic processHOM03D000239
GO:0006026IEAPLAZA Homologyaminoglycan catabolic processHOM03D000239
GO:1901136IEAPLAZA Homologycarbohydrate derivative catabolic processHOM03D000239
GO:0009056IEAPLAZA Homologycatabolic processHOM03D000239
GO:1901135IEAPLAZA Homologycarbohydrate derivative metabolic processHOM03D000239
GO:0009057IEAPLAZA Homologymacromolecule catabolic processHOM03D000239
GO:0006022IEAPLAZA Homologyaminoglycan metabolic processHOM03D000239
GO:1901072IEAPLAZA Homologyglucosamine-containing compound catabolic processHOM03D000239
GO:1901071IEAPLAZA Homologyglucosamine-containing compound metabolic processHOM03D000239
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03D000239

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004568IEAGenome Projectchitinase activity
GO:0008061IEAGenome Projectchitin binding
GO:0008843ISOPLAZA Integrative Orthologyendochitinase activityOS03G30470
GO:0016231ISOPLAZA Integrative Orthologybeta-N-acetylglucosaminidase activityOS03G30470
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03D000239
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03D000239
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000239

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT3G12500
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT3G12500
GO:0005773ISOPLAZA Integrative OrthologyvacuoleAT3G12500

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001002Chitin-binding, type 1
IPR000726Glycoside hydrolase, family 19, catalytic
IPR018371Chitin-binding, type 1, conserved site
IPR023346Lysozyme-like domain

Mapman id Description
20.1stress.biotic
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network