PLAZA 3.0 Dicots gene overview : AL3G06180

Gene: AL3G06180 (Arabidopsis lyrata)

Overview

Gene Identifier: AL3G06180
Transcript Identifier: AL3G06180.1
Gene Type: Coding gene
Location: scaffold_3 : 2441224-2442760 : negative

Family

Gene family: HOM03D000116
(819 genes in 31 species)
specific family
Subfamily: ORTHO03D026796
(5 genes in 5 species)
specific family
Duplication type: Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine): Copper transport protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	477915
GeneName	g477915
id	PAC:16050792

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0030001	IEA	Genome Project	metal ion transport
GO:0044765	IEA	PLAZA Homology	single-organism transport	HOM03D000116
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000116
GO:0006810	IEA	PLAZA Homology	transport	HOM03D000116
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03D000116
GO:0006812	IEA	PLAZA Homology	cation transport	HOM03D000116
GO:0006811	IEA	PLAZA Homology	ion transport	HOM03D000116
GO:0051179	IEA	PLAZA Homology	localization	HOM03D000116

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046872	IEA	Genome Project	metal ion binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000116
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000116

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	AT3G06130

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006121	Heavy metal-associated domain, HMA

Mapman id	Description
35.1	not assigned.no ontology

No SignalP domains detected for this gene.