PLAZA 3.0 Dicots gene overview : AL2G16190

Gene: AL2G16190 (Arabidopsis lyrata)

Overview

Gene Identifier: AL2G16190
Transcript Identifier: AL2G16190.1
Gene Type: Coding gene
Location: scaffold_2 : 12897956-12900272 : negative

Family

Gene family: HOM03D000650
(210 genes in 31 species)
specific family
Subfamily: ORTHO03D005760
(33 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine): Glycerate dehydrogenase HPR, peroxisomal

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	475922
GeneName	g475922
id	PAC:16058092

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	Genome Project	metabolic process
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0009853	ISO	PLAZA Integrative Orthology	photorespiration	AT1G68010
GO:0042631	ISO	PLAZA Integrative Orthology	cellular response to water deprivation	AT1G68010
GO:0071482	ISO	PLAZA Integrative Orthology	cellular response to light stimulus	AT1G68010
GO:0009854	ISO	PLAZA Integrative Orthology	oxidative photosynthetic carbon pathway	AT1G68010
GO:0006564	IEA	PLAZA Homology	L-serine biosynthetic process	HOM03D000650

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016616	IEA	Genome Project	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	IEA	Genome Project	NAD binding
GO:0048037	IEA	Genome Project	cofactor binding
GO:0008465	ISO	PLAZA Integrative Orthology	glycerate dehydrogenase activity	AT1G68010
GO:0008266	ISO	PLAZA Integrative Orthology	poly(U) RNA binding	AT1G68010
GO:0016614	IEA	PLAZA Homology	oxidoreductase activity, acting on CH-OH group of donors	HOM03D000650
GO:0004617	IEA	PLAZA Homology	phosphoglycerate dehydrogenase activity	HOM03D000650
GO:0016597	IEA	PLAZA Homology	amino acid binding	HOM03D000650

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0048046	ISO	PLAZA Integrative Orthology	apoplast	AT1G68010
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT1G68010
GO:0005777	ISO	PLAZA Integrative Orthology	peroxisome	AT1G68010

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR016040	NAD(P)-binding domain
IPR006140	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Mapman id	Description
1.2.6	PS.photorespiration.hydroxypyruvate reductase

No SignalP domains detected for this gene.