Gene: AL2G08150 (Arabidopsis lyrata)

Overview top

Gene Identifier
AL2G08150
Transcript Identifier
AL2G08150.1
Gene Type
Coding gene
Location
scaffold_2 : 4978859-4982480 : positive

Family

Gene family
HOM03D001750
(94 genes in 30 species)
specific family
Subfamily
ORTHO03D036636
(3 genes in 2 species)
specific family
Duplication type
Tandem duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
Putative E3 ubiquitin-protein ligase ORTHRUS 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pid315436
GeneNameg315436
idPAC:16045215

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010228ISOPLAZA Tree-based Orthologyvegetative to reproductive phase transition of meristemAT5G39550
GO:0090309ISOPLAZA Integrative Orthologypositive regulation of methylation-dependent chromatin silencingAT1G57820 AT1G66040 AT1G66050 AT5G39550
GO:0010424ISOPLAZA Integrative OrthologyDNA methylation on cytosine within a CG sequenceAT1G57820 AT5G39550
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT1G57820 AT4G08590 AT1G66050 AT5G39550
GO:0051301ISOPLAZA Integrative Orthologycell divisionAT1G57820
GO:0031508ISOPLAZA Integrative Orthologycentromeric heterochromatin assemblyAT1G57820
GO:0032776ISOPLAZA Integrative OrthologyDNA methylation on cytosineAT1G57820
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT1G57820

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0042393IEAGenome Projecthistone binding
GO:0008270IEAInterProzinc ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT1G57820 AT4G08590 AT1G66040 AT1G66050 AT5G39550
GO:0010385ISOPLAZA Integrative Orthologydouble-stranded methylated DNA bindingAT1G57820
GO:0003682ISOPLAZA Integrative Orthologychromatin bindingAT1G57820
GO:0010429ISOPLAZA Integrative Orthologymethyl-CpNpN bindingAT1G57820 AT5G39550
GO:0010428ISOPLAZA Integrative Orthologymethyl-CpNpG bindingAT1G57820 AT5G39550
GO:0008327ISOPLAZA Integrative Orthologymethyl-CpG bindingAT1G57820 AT5G39550

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Tree-based OrthologycytoplasmAT4G08590
GO:0005634ISOPLAZA Integrative OrthologynucleusAT1G57820 AT1G66040 AT1G66050 AT5G39550
GO:0010369ISOPLAZA Integrative OrthologychromocenterAT1G57820

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001841Zinc finger, RING-type
IPR019786Zinc finger, PHD-type, conserved site
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003105SRA-YDG
IPR017907Zinc finger, RING-type, conserved site
IPR011011Zinc finger, FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR001965Zinc finger, PHD-type
IPR015947PUA-like domain

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.