PLAZA 3.0 Dicots gene overview : AL1G52010

Gene: AL1G52010 (Arabidopsis lyrata)

Overview

Gene Identifier: AL1G52010
Transcript Identifier: AL1G52010.1
Gene Type: Coding gene
Location: scaffold_1 : 31340928-31341358 : positive

Family

Gene family: HOM03D018745
(2 genes in 1 species)
specific family

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Descriptions

Description (AnnoMine): Probable calcium-binding protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	914860
GeneName	g914860
id	PAC:16035496

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005509	IEA	InterPro	calcium ion binding

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011992	EF-hand domain pair
IPR018247	EF-Hand 1, calcium-binding site
IPR002048	EF-hand domain

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.