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WorkbenchGene: AL1G45790 (Arabidopsis lyrata)
Overview 
- Gene Identifier
- AL1G45790
- Transcript Identifier
- AL1G45790.1
- Gene Type
- Coding gene
- Location
- scaffold_1 : 26906985-26908804 : negative
Family
- Gene family
- Subfamily
- Duplication type
- Block duplicate
Descriptions
- Description (AnnoMine)
-
Transcription factor bHLH122
Description of best ortholog(s):
Identifiers
| Identifier | Name |
|---|---|
| pid | 474229 |
| GeneName | g474229 |
| id | PAC:16051751 |
Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologs using the Integrative Orthology Viewer.
- ...the conserved binding sites (upstream/downstream,intron)
View
- ...sequences.
- ...the multiple sequence alignment of the gene family with BioJS
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBIs protein database.
- ...the gene in Genomeview, a genome browser
- ...all colinear gene pairs.
Biological Process
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0006355 | IEA | Genome Project | regulation of transcription, DNA-dependent | |
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT1G51140 |
Molecular Function
| GO term | Evidence(s) | Provider | Description | Source |
|---|---|---|---|---|
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0005515 | IEA | PLAZA Homology | protein binding | HOM03D000046 |
| GO:0005488 | IEA | PLAZA Homology | binding | HOM03D000046 |
Color Legend
| Experimental Evidence |
| Electronic Evidence |
| Computational Reviewed Evidence |
| Mapman id | Description |
|---|---|
| 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family |
No SignalP domains detected for this gene.