PLAZA 3.0 Dicots gene overview : AL1G20180

Gene: AL1G20180 (Arabidopsis lyrata)

Overview

Gene Identifier: AL1G20180
Transcript Identifier: AL1G20180.1
Gene Type: Coding gene
Location: scaffold_1 : 8134541-8139454 : positive

Family

Gene family: HOM03D000413
(303 genes in 31 species)
specific family
Subfamily: ORTHO03D000036
(260 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine): Probable respiratory burst oxidase homolog protein I

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	312861
GeneName	g312861
id	PAC:16053008

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0006952	ISO	PLAZA Integrative Orthology	defense response	AT1G19230

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005506	IEA	Genome Project	iron ion binding
GO:0009055	IEA	Genome Project	electron carrier activity
GO:0016491	IEA	Genome Project	oxidoreductase activity
GO:0050660	IEA	Genome Project	flavin adenine dinucleotide binding
GO:0004601	IEA	Genome Project	peroxidase activity
GO:0050664	IEA	Genome Project	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
GO:0005509	IEA	InterPro	calcium ion binding
GO:0016209	IEA	PLAZA Homology	antioxidant activity	HOM03D000413
GO:0016651	IEA	PLAZA Homology	oxidoreductase activity, acting on NAD(P)H	HOM03D000413
GO:0016684	IEA	PLAZA Homology	oxidoreductase activity, acting on peroxide as acceptor	HOM03D000413

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	Genome Project	integral to membrane
GO:0016020	IEA	InterPro	membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002048	EF-hand domain
IPR000778	Cytochrome b245, heavy chain
IPR011992	EF-hand domain pair
IPR017938	Riboflavin synthase-like beta-barrel
IPR018247	EF-Hand 1, calcium-binding site
IPR013112	FAD-binding 8
IPR013121	Ferric reductase, NAD binding
IPR017927	Ferredoxin reductase-type FAD-binding domain
IPR013130	Ferric reductase transmembrane component-like domain
IPR013623	NADPH oxidase Respiratory burst

Mapman id	Description
20.1.1	stress.biotic.respiratory burst

No SignalP domains detected for this gene.