PLAZA 3.0 Dicots gene overview : AL1G01770

Gene: AL1G01770 (Arabidopsis lyrata)

Overview

Gene Identifier: AL1G01770
Transcript Identifier: AL1G01770.1
Gene Type: Coding gene
Location: scaffold_1 : 684011-686672 : negative

Family

Gene family: HOM03D000542
(244 genes in 29 species)
specific family
Subfamily: ORTHO03D004500
(35 genes in 27 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): protein ligase MARCH3

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	909919
GeneName	g909919
id	PAC:16058939

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA	InterPro	zinc ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005886	ISO	PLAZA Tree-based Orthology	plasma membrane	AT4G02075

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR022143	Protein of unknown function DUF3675
IPR011016	Zinc finger, RING-CH-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

No MapMan annotations defined for this gene.

No SignalP domains detected for this gene.