PLAZA 3.0 Dicots gene overview : AL0G04050

Gene: AL0G04050 (Arabidopsis lyrata)

Overview

Gene Identifier: AL0G04050
Transcript Identifier: AL0G04050.1
Gene Type: Coding gene
Location: scaffold_9 : 1403116-1403574 : positive

Family

Gene family: HOM03D000053
(1435 genes in 31 species)
specific family
Subfamily: ORTHO03D027967
(5 genes in 5 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Calmodulin-like protein

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	333046
GeneName	g333046
id	PAC:16056166

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009567	ISO	PLAZA Integrative Orthology	double fertilization forming a zygote and endosperm	AT4G12860

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005509	IEA	InterPro	calcium ion binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000053
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000053
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000053
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000053

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	ISO	PLAZA Integrative Orthology	cytoplasm	AT4G12860

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR018247	EF-Hand 1, calcium-binding site
IPR002048	EF-hand domain
IPR011992	EF-hand domain pair

Mapman id	Description
30.3	signalling.calcium

No SignalP domains detected for this gene.