Anchorpoints

Gene id
TC0009G24480
Organism
Theobroma cacao

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL6G19660No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT5G19400Telomerase activating protein Est1 Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins. SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis. Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality. SMG7; CONTAINS InterPro DOMAIN/s: Telomerase activating protein Est1 (InterPro:IPR019458); BEST Arabidopsis thaliana protein match is: Telomerase activating protein Est1 (TAIR:AT1G28260.2); Has 648 Blast hits to 623 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 367; Fungi - 169; Plants - 90; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G09520No description available.A02+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV4G13860No description available.Bvchr4.sca001-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL03G11620No description available.Chr3+View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00024G01490No description available.CM3.5_scaffold00024+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00157G00590No description available.supercontig_157+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G17290No description available.scaffold_6+View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00120G00250No description available.scaffold00120+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G47830Protein SMG7 (probable)LG2+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM02G44801No description available.Gm02+View
GM20G08040No description available.Gm20-View
GM07G35910No description available.Gm07-View
GM14G03940No description available.Gm14-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR09G07490No description available.Chr09+View
GR13G25360No description available.Chr13+View
GR06G12440No description available.Chr06-View
GR01G13370No description available.Chr01+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME07991G00050No description available.scaffold07991-View
ME06916G01300No description available.scaffold06916+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT5G089510telomerase activating protein Est1chr5+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G29290No description available.scaffold_4+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G27540No description available.Chr01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30142G00040No description available.30142-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G25010similar to AT5G19400|SMG7ch6-6-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV06G10910name=GSVIVG01037278001;chr6+View


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Gene id
Species
Description
Chromosome
Strand