Anchorpoints

Gene id
PT04G00310
Organism
Populus trichocarpa

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PT14G15890No description available.Chr14+View
PT02G22420No description available.Chr02-View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G20000No description available.scaffold_7+View
AL2G03130No description available.scaffold_2-View
AL6G36080No description available.scaffold_6+View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G22250RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 910 Blast hits to 910 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 334; Fungi - 67; Plants - 314; Viruses - 43; Other Eukaryotes - 152 (source: NCBI BLink). RING/U-box superfamily protein4-View
AT4G03965RING/U-box superfamily protein RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G22250.1); Has 1224 Blast hits to 1224 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 580; Fungi - 72; Plants - 352; Viruses - 38; Other Eukaryotes - 182 (source: NCBI BLink).4+View
AT1G62370RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G03965.1); Has 610 Blast hits to 610 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 219; Fungi - 27; Plants - 270; Viruses - 11; Other Eukaryotes - 83 (source: NCBI BLink). RING/U-box superfamily protein1+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G46270No description available.A03-View
BR03G26310No description available.A03+View
BR01G12480No description available.A01-View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV8G12450No description available.Bvchr8.sca004-View

Citrullus lanatus

Gene id Description Chromosome Strand Multiplicon
CL01G21720No description available.Chr1-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00007G04490No description available.CM3.5_scaffold00007+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00132G00300No description available.supercontig_132+View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_006G30840No description available.scaffold_6+View
CRU_007G18150No description available.scaffold_7+View
CRU_002G02520No description available.scaffold_2-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00126G00260No description available.scaffold00126+View
CS00007G03350No description available.scaffold00007+View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0011G06300No description available.scaffold_11-View
EG0005G29970No description available.scaffold_5-View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV3G01790Postreplication repair E3 ubiquitin-protein ligase RAD18 (probable)LG3+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM17G01340No description available.Gm17-View
GM07G39410No description available.Gm07+View
GM09G01090No description available.Gm09+View
GM15G11920No description available.Gm15+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G17020No description available.Chr07-View
GR10G18480No description available.Chr10+View
GR09G18240No description available.Chr09-View

Lotus japonicus

Gene id Description Chromosome Strand Multiplicon
LJ6G021800No description available.chr6+View
LJ4G001580No description available.chr4-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD05G001030No description available.5-View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME05214G00410No description available.scaffold05214+View

Medicago truncatula

Gene id Description Chromosome Strand Multiplicon
MT4G132760zinc finger C C3HC4 type (RING finger) proteinchr4+View
MT2G025080RING/U-box protein C putativechr2+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_004G01290No description available.scaffold_4-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC29842G00220No description available.29842-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G081180Zinc finger family protein (AHRD V1 *--- D7MVE2_ARALY)%3B contains Interpro domain(s) IPR001841 Zinc finger%2C RING-typech02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST07G018580Mitochondrial ubiquitin ligase activator of nfkb 1 (AHRD V1 *--- MUL1_XENLA); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-typechr07+View
ST02G024290Zinc finger family protein (AHRD V1 *-*- D7MVE2_ARALY); contains Interpro domain(s) IPR001841 Zinc finger, RING-typechr02+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0006G22210No description available.scaffold_6+View
TC0001G17730No description available.scaffold_1+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G20370similar to AT4G22250|zinc finger (C3HC4-type RING finger) family proteinch7-4-View
TP6G04740similar to AT4G03965|protein binding / zinc ion bindingch6-1-View
TP2G02230similar to AT1G62370|zinc finger (C3HC4-type RING finger) family proteinch2-1-View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV12G11430name=GSVIVG01030507001;chr12+View


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Gene id
Species
Description
Chromosome
Strand