Anchorpoints

Gene id
AL7G36680
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL5G05780No description available.scaffold_5-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT3G27010'TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20' (TCP20); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT5G41030.1); Has 543 Blast hits to 539 proteins in 120 species: Archae - 0; Bacteria - 15; Metazoa - 2; Fungi - 0; Plants - 525; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes. TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 203-View
AT5G41030TCP family transcription factor TCP family transcription factor ; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (TAIR:AT3G27010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).5+View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR09G02250No description available.A09-View
BR02G32860No description available.A02+View
BR06G33200No description available.A06+View
BR04G10300No description available.A04+View

Beta vulgaris

Gene id Description Chromosome Strand Multiplicon
BV6G17890No description available.Bvchr6.sca002-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00023G01680No description available.CM3.5_scaffold00023+View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00070G01200No description available.supercontig_70-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G33120No description available.scaffold_7-View
CRU_005G04790No description available.scaffold_5-View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM19G26560No description available.Gm19+View
GM16G05840No description available.Gm16-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR06G04380No description available.Chr06+View
GR01G27330No description available.Chr01+View
GR12G08460No description available.Chr12-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD09G000680No description available.9-View

Oryza sativa ssp. japonica

Gene id Description Chromosome Strand Multiplicon
OS01G69980TCP family transcription factor, putative, expressed1+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_003G28520No description available.scaffold_3+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT01G32710No description available.Chr01-View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL02G068200TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ)%3B contains Interpro domain(s) IPR005333 Transcription factor%2C TCPch02+View
SL02G094290TCP family transcription factor (AHRD V1 ***- A6MCZ2_9ORYZ)%3B contains Interpro domain(s) IPR005333 Transcription factor%2C TCPch02+View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST02G014280TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCPchr02+View
ST02G037490TCP family transcription factor (AHRD V1 *-** A6MCZ2_9ORYZ); contains Interpro domain(s) IPR005333 Transcription factor, TCPchr02+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G00880similar to AT5G41030|TCP family transcription factor, putativech7-1-View
TP2G16130similar to AT3G27010|AT-TCP20ch2-4-View


Download

Gene id
Species
Description
Chromosome
Strand