Functional Clusters   top

Cluster information

Cluster identifier
CH_ath_162
Species
Arabidopsis thaliana
Chromosome
3
E-value
0.0000000916875
Data type
MapMan
Data identifier
29.5.11.4.2
Data description
protein.degradation.ubiquitin.E3.RING

Statistics

Gene family Num genes total Num genes species Num genes cluster Num species
HOM03D00025043526830
HOM03D002048833129

Gene information

In cluster Gene id Description Gene type Gene family
V AT3G45470IBR domain containing protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25360.1); Has 2895 Blast hits to 2887 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 1211; Fungi - 626; Plants - 637; Viruses - 2; Other Eukaryotes - 419 (source: NCBI BLink).Coding geneHOM03D000250 orphan gene
V AT3G45480protein ligase ARIH1Coding geneHOM03D000250 ORTHO03D078282
X AT3G45490BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G25370.1); Has 99 Blast hits to 96 proteins in 10 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03D000250 orphan gene
X AT3G45500BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 48 Blast hits to 46 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03D012837 ORTHO03D069289
V AT3G45510RING/U-box protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 1545 Blast hits to 1533 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 198; Plants - 547; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).Coding geneHOM03D000250 orphan gene
X AT3G45520transposable element geneTransposon
X AT3G45525BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45480.1); Has 31 Blast hits to 29 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).Coding geneHOM03D012837 orphan gene
X AT3G45530Cysteine/Histidine-rich C1 domain family proteinCoding geneHOM03D000134 ORTHO03D010930
V AT3G45540RING/U-box protein with C6HC-type zinc finger; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box protein with C6HC-type zinc finger (TAIR:AT3G45580.1); Has 2900 Blast hits to 2879 proteins in 213 species: Archae - 0; Bacteria - 2; Metazoa - 1213; Fungi - 549; Plants - 696; Viruses - 0; Other Eukaryotes - 440 (source: NCBI BLink).Coding geneHOM03D000250 ORTHO03D048053
X AT3G45550transposable element geneTransposon
V AT3G45555RING/U-box proteinCoding geneHOM03D000250 ORTHO03D045229
V AT3G45560E3 ubiquitin-protein ligaseCoding geneHOM03D000250 orphan gene
V AT3G45570RING/U-box protein with C6HC-type zinc finger domainCoding geneHOM03D000250 ORTHO03D017359
X AT3G45577tRNA-intron endonucleases; FUNCTIONS IN: tRNA-intron endonuclease activity; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation; CONTAINS InterPro DOMAIN/s: tRNA intron endonuclease, N-terminal (InterPro:IPR006678); BEST Arabidopsis thaliana protein match is: splicing endonuclease 1 (TAIR:AT3G45590.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).Coding geneHOM03D003278 orphan gene
V AT3G45580Probable E3 ubiquitin-protein ligase RNF144ACoding geneHOM03D000250 ORTHO03D017359
X AT3G45590splicing endonuclease subunit Sen2-1Coding geneHOM03D003278 ORTHO03D002988
X AT3G45600Tetraspanin-3Coding geneHOM03D000276 ORTHO03D004750
X AT3G45610Dof-type zinc finger DNA-binding family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1099 Blast hits to 1094 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1090; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).Coding geneHOM03D000095 ORTHO03D034175
X AT3G45620and CUL4-associated factor 8Coding geneHOM03D002275 ORTHO03D006842
V AT3G45630RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1); Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0; Bacteria - 612; Metazoa - 421; Fungi - 369; Plants - 161; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).Coding geneHOM03D002048 ORTHO03D013036