Table Overview Functional Clusters: Lotus japonicus top

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Cluster id E-value Cluster size Chromosome GO label GO type Description
CH_lja_19.14863e-6930chloroplastGO:0009535Cellular componentchloroplast thylakoid membrane
CH_lja_100.0000000002887216chr3GO:0008234Molecular functioncysteine-type peptidase activity
CH_lja_1000.0004033612chr3GO:0016992Molecular functionlipoate synthase activity
CH_lja_1010.0004033612chr4GO:0008146Molecular functionsulfotransferase activity
CH_lja_1020.0004033612chr5GO:0003917Molecular functionDNA topoisomerase type I activity
CH_lja_1030.0004794924chr6GO:0005198Molecular functionstructural molecule activity
CH_lja_1040.00052399610chr4GO:0008152Biological processmetabolic process
CH_lja_1050.0005857674chr4GO:0016758Molecular functiontransferase activity, transferring hexosyl groups
CH_lja_1060.0006050082chr2GO:0003856Molecular function3-dehydroquinate synthase activity
CH_lja_1070.0006184053chr1GO:0042545Biological processcell wall modification
CH_lja_1080.00062124412chr4GO:0055114Biological processoxidation-reduction process
CH_lja_1090.0006592745chr4GO:0019829Molecular functioncation-transporting ATPase activity
CH_lja_110.000000001406885chr3GO:0048544Biological processrecognition of pollen
CH_lja_1100.0006709763chr4GO:0000786Cellular componentnucleosome
CH_lja_1110.0006722692chr2GO:0008964Molecular functionphosphoenolpyruvate carboxylase activity
CH_lja_1120.0007149464chr4GO:0016747Molecular functiontransferase activity, transferring acyl groups other than amino-acyl groups
CH_lja_1130.0007662453chr6GO:0008762Molecular functionUDP-N-acetylmuramate dehydrogenase activity
CH_lja_1140.0008513583chr4GO:0016706Molecular functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
CH_lja_120.000000001748325chr3GO:0006826Biological processiron ion transport
CH_lja_130.000000001854455chr1GO:0005507Molecular functioncopper ion binding
CH_lja_140.000000002789434chr1GO:0006865Biological processamino acid transport
CH_lja_150.000000006779413chr1GO:0046938Biological processphytochelatin biosynthetic process
CH_lja_160.000000006779413chr5GO:0004867Molecular functionserine-type endopeptidase inhibitor activity
CH_lja_170.00000003332374chr6GO:0030145Molecular functionmanganese ion binding
CH_lja_180.00000003332374chr2GO:0004806Molecular functiontriglyceride lipase activity
CH_lja_190.00000003847326chr5GO:0016758Molecular functiontransferase activity, transferring hexosyl groups
CH_lja_24.15074e-218chr6GO:0009607Biological processresponse to biotic stimulus
CH_lja_200.00000006778953chr4GO:0005778Cellular componentperoxisomal membrane
CH_lja_210.00000007354886chr4GO:0005507Molecular functioncopper ion binding
CH_lja_220.0000001355753chr2GO:0005680Cellular componentanaphase-promoting complex
CH_lja_230.0000001616787chr4GO:0004857Molecular functionenzyme inhibitor activity
CH_lja_240.0000002041664chr1GO:0038023Molecular functionsignaling receptor activity
CH_lja_250.0000002711543chr2GO:0005544Molecular functioncalcium-dependent phospholipid binding
CH_lja_260.0000003548365chr4GO:0016620Molecular functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
CH_lja_270.0000004630045chr5GO:0005507Molecular functioncopper ion binding
CH_lja_280.00000054085722chr1GO:0016740Molecular functiontransferase activity
CH_lja_290.0000005422573chr6GO:0004150Molecular functiondihydroneopterin aldolase activity
CH_lja_31.78915e-208chr2GO:0031012Cellular componentextracellular matrix
CH_lja_300.0000006857454chr1GO:0010181Molecular functionFMN binding
CH_lja_310.0000006979329chr4GO:0005215Molecular functiontransporter activity
CH_lja_320.0000007138914chr2GO:0004866Molecular functionendopeptidase inhibitor activity
CH_lja_330.0000008133383chr5GO:0004329Molecular functionformate-tetrahydrofolate ligase activity
CH_lja_340.0000009488943chr1GO:0009098Biological processleucine biosynthetic process
CH_lja_350.0000009515834chr2GO:0016866Molecular functionintramolecular transferase activity
CH_lja_360.0000010645114chr3GO:0016491Molecular functionoxidoreductase activity
CH_lja_370.000001151616chr2GO:0016706Molecular functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
CH_lja_380.000001241454chr3GO:0016165Molecular functionlinoleate 13S-lipoxygenase activity
CH_lja_390.000001742874chr3GO:0048544Biological processrecognition of pollen
CH_lja_42.38087e-179chr6GO:0004190Molecular functionaspartic-type endopeptidase activity
CH_lja_400.000002191734chr4GO:0004707Molecular functionMAP kinase activity
CH_lja_410.000002277083chr3GO:0080019Molecular functionfatty-acyl-CoA reductase (alcohol-forming) activity
CH_lja_420.0000023723chr6GO:0004435Molecular functionphosphatidylinositol phospholipase C activity
CH_lja_430.000003469025chr2GO:0030246Molecular functioncarbohydrate binding
CH_lja_440.000004745594chr1GO:0030145Molecular functionmanganese ion binding
CH_lja_450.0000055323chr2GO:0006662Biological processglycerol ether metabolic process
CH_lja_460.000006569253chr3GO:0048544Biological processrecognition of pollen
CH_lja_470.000006569253chr1GO:0048038Molecular functionquinone binding
CH_lja_480.000006636496chr1GO:0016758Molecular functiontransferase activity, transferring hexosyl groups
CH_lja_490.000006636496chr4GO:0016758Molecular functiontransferase activity, transferring hexosyl groups
CH_lja_50.0000000000002645036chr1GO:0006559Biological processL-phenylalanine catabolic process
CH_lja_500.000006890264chr4GO:0008762Molecular functionUDP-N-acetylmuramate dehydrogenase activity
CH_lja_510.0000071307113chr4GO:0016787Molecular functionhydrolase activity
CH_lja_520.0000075452915chr4GO:0044464Cellular componentcell part
CH_lja_530.000007728533chr5GO:0006869Biological processlipid transport
CH_lja_540.000007753433chr2GO:0042393Molecular functionhistone binding
CH_lja_550.000008275884chr1GO:1901605Biological processalpha-amino acid metabolic process
CH_lja_560.000008932548chr3GO:0000166Molecular functionnucleotide binding
CH_lja_570.000009016623chr3GO:0004185Molecular functionserine-type carboxypeptidase activity
CH_lja_580.000009391824chr5GO:0050664Molecular functionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
CH_lja_590.000009971314chr3GO:0016810Molecular functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
CH_lja_60.0000000000009115794chr5GO:0045430Molecular functionchalcone isomerase activity
CH_lja_600.00001044033chr5GO:0008171Molecular functionO-methyltransferase activity
CH_lja_610.00001044724chr5GO:0004713Molecular functionprotein tyrosine kinase activity
CH_lja_620.00001117853chr3GO:0006621Biological processprotein retention in ER lumen
CH_lja_630.00001327923chr1GO:0017038Biological processprotein import
CH_lja_640.00001718384chr6GO:0008234Molecular functioncysteine-type peptidase activity
CH_lja_650.00002647614chr1GO:0006855Biological processdrug transmembrane transport
CH_lja_660.00002980013chr4GO:0004506Molecular functionsqualene monooxygenase activity
CH_lja_670.00003362593chr3GO:0004222Molecular functionmetalloendopeptidase activity
CH_lja_680.00003698853chr3GO:0006855Biological processdrug transmembrane transport
CH_lja_690.00004892078chr5GO:0016773Molecular functionphosphotransferase activity, alcohol group as acceptor
CH_lja_70.00000000000394346chr4GO:0016762Molecular functionxyloglucan:xyloglucosyl transferase activity
CH_lja_700.00005046324chr5GO:0006855Biological processdrug transmembrane transport
CH_lja_710.00005480755chr5GO:0050662Molecular functioncoenzyme binding
CH_lja_720.00006722692chr2GO:0033897Molecular functionribonuclease T2 activity
CH_lja_730.00006722692chr1GO:0030328Biological processprenylcysteine catabolic process
CH_lja_740.00006722692chr5GO:0046417Biological processchorismate metabolic process
CH_lja_750.00006722692chr6GO:0004097Molecular functioncatechol oxidase activity
CH_lja_760.00006722692chr1GO:0017057Molecular function6-phosphogluconolactonase activity
CH_lja_770.00006722692chr5GO:0004326Molecular functiontetrahydrofolylpolyglutamate synthase activity
CH_lja_780.00006722692chr1GO:0004363Molecular functionglutathione synthase activity
CH_lja_790.000070172719chr4GO:0003824Molecular functioncatalytic activity
CH_lja_80.00000000001367284chr3GO:0000724Biological processdouble-strand break repair via homologous recombination
CH_lja_800.0000862423chr5GO:0007067Biological processmitosis
CH_lja_810.0000862423chr6GO:0016602Cellular componentCCAAT-binding factor complex
CH_lja_820.0001326575chr2GO:0046983Molecular functionprotein dimerization activity
CH_lja_830.0001719995chr4GO:0020037Molecular functionheme binding
CH_lja_840.0001759243chr6GO:0006597Biological processspermine biosynthetic process
CH_lja_850.000178653chr4GO:0010333Molecular functionterpene synthase activity
CH_lja_860.0001983663chr6GO:0006979Biological processresponse to oxidative stress
CH_lja_870.0002016742chr5GO:0004358Molecular functionglutamate N-acetyltransferase activity
CH_lja_880.0002016742chr1GO:0051028Biological processmRNA transport
CH_lja_890.0002016812chr4GO:0004526Molecular functionribonuclease P activity
CH_lja_90.00000000006836244chr1GO:0004634Molecular functionphosphopyruvate hydratase activity
CH_lja_900.0002016812chr3GO:0004618Molecular functionphosphoglycerate kinase activity
CH_lja_910.0002016812chr3GO:0004416Molecular functionhydroxyacylglutathione hydrolase activity
CH_lja_920.0003113033chr1GO:0045735Molecular functionnutrient reservoir activity
CH_lja_930.0003149673chr5GO:0004221Molecular functionubiquitin thiolesterase activity
CH_lja_940.0004033342chr2GO:0018343Biological processprotein farnesylation
CH_lja_950.0004033612chr1GO:0005375Molecular functioncopper ion transmembrane transporter activity
CH_lja_960.0004033612chr6GO:0045893Biological processpositive regulation of transcription, DNA-dependent
CH_lja_970.0004033612chr6GO:0018580Molecular functionnitronate monooxygenase activity
CH_lja_980.0004033612chr1GO:0003885Molecular functionD-arabinono-1,4-lactone oxidase activity
CH_lja_990.0004033612chr4GO:0009916Molecular functionalternative oxidase activity

Experiments Overview

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal Cluster count
1GOPrimary GO data only.230800.001X114
2GOPrimary and orthology projected GO data.230800.001X172
3GOAll GO data.230800.001X217
4GOPrimary GO data only.101503000.001X18
5GOPrimary and orthology projected GO data.101503000.001X26
6GOAll GO data.101503000.001X41
7GOPrimary GO data only.230800.001V9
8GOPrimary and orthology projected GO data.230800.001V11
9GOAll GO data.230800.001V17
10GOPrimary GO data only.101503000.001V7
11GOPrimary and orthology projected GO data.101503000.001V10
12GOAll GO data.101503000.001V13
13InterProNo filter applied.230800.001X311
14InterProNo filter applied.101503000.001X4
15InterProNo filter applied.230800.001V12