Table Overview Functional Clusters: Chlamydomonas reinhardtii top

Data Overview


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Cluster id E-value Cluster size Chromosome MapMan Description
CH_cre_11.36811e-3627chromosome_628.1.3DNA.synthesis/chromatin structure.histone
CH_cre_100.0000000005565774chromosome_122.2.1.3.2major CHO metabolism.degradation.sucrose.invertases.cell wall
CH_cre_110.0000000006936525chromosome_820.2.3stress.abiotic.drought/salt
CH_cre_120.000000002318044chromosome_1713.1.2.2amino acid metabolism.synthesis.glutamate family.proline
CH_cre_130.000000003125995chromosome_1730.2signalling.receptor kinases
CH_cre_140.00000003231244chromosome_829.5.11.1protein.degradation.ubiquitin.ubiquitin
CH_cre_150.00000004731234chromosome_1627.3.66RNA.regulation of transcription.Psudo ARR transcription factor family
CH_cre_160.00000005298736chromosome_1026.10misc.cytochrome P450
CH_cre_170.00000007765133chromosome_1610.5.2cell wall.cell wall proteins.proline rich proteins
CH_cre_180.0000001080318chromosome_1129.4protein.postranslational modification
CH_cre_190.0000003105743chromosome_525.8C1-metabolism.tetrahydrofolate synthase
CH_cre_27.89528e-3427chromosome_628.1.3DNA.synthesis/chromatin structure.histone
CH_cre_200.0000003298424chromosome_134.15transport.potassium
CH_cre_210.0000003298424chromosome_234.7transport.phosphate
CH_cre_220.000000599654chromosome_1429.5.3protein.degradation.cysteine protease
CH_cre_230.0000007208334chromosome_727.1.2RNA.processing.RNA helicase
CH_cre_240.0000007763593chromosome_713.1.5.1.1amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
CH_cre_250.000001096215chromosome_529.5.1protein.degradation.subtilases
CH_cre_260.0000011274chromosome_411.2.1lipid metabolism.FA desaturation.desaturase
CH_cre_270.000002992624chromosome_1429.5.3protein.degradation.cysteine protease
CH_cre_280.00000422124chromosome_1724Biodegradation of Xenobiotics
CH_cre_290.000004603154chromosome_1734.15transport.potassium
CH_cre_33.9858e-2418chromosome_1228.1.3DNA.synthesis/chromatin structure.histone
CH_cre_300.000007066273chromosome_126.16misc.myrosinases-lectin-jacalin
CH_cre_310.000007760823chromosome_729.6.2.1.1protein.folding.chaperones and co-chaperones.small HSPs.chaperones
CH_cre_320.000007760823chromosome_929.2.99protein.synthesis.misc
CH_cre_330.00001265364chromosome_926.10misc.cytochrome P450
CH_cre_340.00001858895chromosome_1231.6.1.10cell.motility.eukaryotes.flagellar associated proteins
CH_cre_350.00002989583chromosome_1629.5.11.1protein.degradation.ubiquitin.ubiquitin
CH_cre_360.00005672124chromosome_1328.1.3DNA.synthesis/chromatin structure.histone
CH_cre_370.00007881613chromosome_229.6.2protein.folding.chaperones and co-chaperones
CH_cre_380.00007881613chromosome_1124Biodegradation of Xenobiotics
CH_cre_390.00007881613chromosome_324Biodegradation of Xenobiotics
CH_cre_45.60884e-1616chromosome_1728.1.3DNA.synthesis/chromatin structure.histone
CH_cre_400.00008551054chromosome_61.1.1.1PS.lightreaction.photosystem II.LHC-II
CH_cre_410.0001037864chromosome_1029.5.11.4.2protein.degradation.ubiquitin.E3.RING
CH_cre_420.0001137592chromosome_916.1.3.1secondary metabolism.isoprenoids.tocopherol biosynthesis.hydroxyphenylpyruvate dioxygenase
CH_cre_430.0001137592chromosome_116.1.3.4secondary metabolism.isoprenoids.tocopherol biosynthesis.tocopherol cyclase
CH_cre_440.0001137592chromosome_21.3.2PS.calvin cycle.rubisco small subunit
CH_cre_450.0001137592chromosome_323.4.4nucleotide metabolism.phosphotransfer and pyrophosphatases.thymidylate kinase
CH_cre_460.0001137592chromosome_727.3.27RNA.regulation of transcription.NAC domain transcription factor family
CH_cre_470.0001137592chromosome_33.2.4minor CHO metabolism.trehalose.trehalase
CH_cre_480.0001137592chromosome_13.8.2minor CHO metabolism.galactose.alpha-galactosidases
CH_cre_490.0001137592chromosome_926.28misc.GDSL-motif lipase
CH_cre_50.0000000000000041896716chromosome_1728.1.3DNA.synthesis/chromatin structure.histone
CH_cre_500.0001137592chromosome_213.1.3.6.1.4amino acid metabolism.synthesis.aspartate family.misc.homoserine.homoserine kinase
CH_cre_510.0001774143chromosome_1626.10misc.cytochrome P450
CH_cre_520.0001774143chromosome_726.10misc.cytochrome P450
CH_cre_530.0002016843chromosome_1634.7transport.phosphate
CH_cre_540.0002268853chromosome_629.2.4protein.synthesis.elongation
CH_cre_550.0002790354chromosome_834.16transport.ABC transporters and multidrug resistance systems
CH_cre_560.0003412582chromosome_320.1.1stress.biotic.respiratory burst
CH_cre_570.0003412582chromosome_1629.1.5protein.aa activation.isoleucine-tRNA ligase
CH_cre_580.0003412782chromosome_1413.1.3.5.2amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase
CH_cre_590.0003412782chromosome_211.8.10lipid metabolism.exotics (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase
CH_cre_60.00000000006625924chromosome_1123.3.1.3nucleotide metabolism.salvage.phosphoribosyltransferases.upp
CH_cre_600.0003412782chromosome_1627.1.20RNA.processing.degradation dicer
CH_cre_610.0004268075chromosome_834.14transport.unspecified cations
CH_cre_620.0004290233chromosome_1029.5.5protein.degradation.serine protease
CH_cre_630.0006639963chromosome_126.1misc.misc2
CH_cre_640.0006824772scaffold_1823.1.2.2nucleotide metabolism.synthesis.purine.GAR Synthetase
CH_cre_650.0006824772chromosome_1323.1.2.8nucleotide metabolism.synthesis.purine.SAICAR lyase
CH_cre_660.0006825552chromosome_61.1.70.1PS.lightreaction.hydrogenase.FeFe-hydrogenase
CH_cre_670.0006825552chromosome_116.4.1secondary metabolism.N misc.alkaloid-like
CH_cre_680.0006825552chromosome_1327.3.18RNA.regulation of transcription.E2F/DP transcription factor family
CH_cre_690.0006825552chromosome_930.2.99signalling.receptor kinases.misc
CH_cre_70.0000000001104214chromosome_1216.8.3secondary metabolism.flavonoids.dihydroflavonols
CH_cre_700.0006825552chromosome_934.4transport.nitrate
CH_cre_710.0006825552chromosome_232micro RNA, natural antisense etc
CH_cre_720.0006825552chromosome_817.1.1.1.10hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase
CH_cre_730.0007827853chromosome_148.2.10TCA / org transformation.other organic acid transformatons.malic
CH_cre_740.0007862563chromosome_1424Biodegradation of Xenobiotics
CH_cre_750.0009125533chromosome_41.5.3PS.carbon concentrating mechanism.algal
CH_cre_80.0000000001546054chromosome_165.3fermentation.ADH
CH_cre_90.0000000003312284chromosome_624.1Biodegradation of Xenobiotics.hydroxyacylglutathione hydrolase

Experiments Overview

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal Cluster count
1GOPrimary GO data only.230800.001X72
2GOPrimary and orthology projected GO data.230800.001X80
3GOAll GO data.230800.001X112
4GOPrimary GO data only.101503000.001X14
5GOPrimary and orthology projected GO data.101503000.001X18
6GOAll GO data.101503000.001X29
7GOPrimary GO data only.230800.001V10
8GOPrimary and orthology projected GO data.230800.001V9
9GOAll GO data.230800.001V14
10GOPrimary GO data only.101503000.001V3
11GOPrimary and orthology projected GO data.101503000.001V2
12GOAll GO data.101503000.001V1
13InterProNo filter applied.230800.001X167
14InterProNo filter applied.101503000.001X10
15InterProNo filter applied.230800.001V21
16InterProNo filter applied.101503000.001V2
17MapManNo filter applied.230800.001X75
18MapManNo filter applied.101503000.001X5
19MapManNo filter applied.230800.001V23
20MapManNo filter applied.101503000.001V2