PLAZA 3.0 Dicots : Functional Clustering

Table Overview Functional Clusters: Chlamydomonas reinhardtii

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Organism: Chlamydomonas reinhardtii
Overview: Chromosomal overview
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Data Overview

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Cluster id	E-value	Cluster size	Chromosome	MapMan	Description
CH_cre_1	1.36811e-36	27	chromosome_6	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_10	0.000000000556577	4	chromosome_12	2.2.1.3.2	major CHO metabolism.degradation.sucrose.invertases.cell wall
CH_cre_11	0.000000000693652	5	chromosome_8	20.2.3	stress.abiotic.drought/salt
CH_cre_12	0.00000000231804	4	chromosome_17	13.1.2.2	amino acid metabolism.synthesis.glutamate family.proline
CH_cre_13	0.00000000312599	5	chromosome_17	30.2	signalling.receptor kinases
CH_cre_14	0.0000000323124	4	chromosome_8	29.5.11.1	protein.degradation.ubiquitin.ubiquitin
CH_cre_15	0.0000000473123	4	chromosome_16	27.3.66	RNA.regulation of transcription.Psudo ARR transcription factor family
CH_cre_16	0.0000000529873	6	chromosome_10	26.10	misc.cytochrome P450
CH_cre_17	0.0000000776513	3	chromosome_16	10.5.2	cell wall.cell wall proteins.proline rich proteins
CH_cre_18	0.000000108031	8	chromosome_11	29.4	protein.postranslational modification
CH_cre_19	0.000000310574	3	chromosome_5	25.8	C1-metabolism.tetrahydrofolate synthase
CH_cre_2	7.89528e-34	27	chromosome_6	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_20	0.000000329842	4	chromosome_1	34.15	transport.potassium
CH_cre_21	0.000000329842	4	chromosome_2	34.7	transport.phosphate
CH_cre_22	0.00000059965	4	chromosome_14	29.5.3	protein.degradation.cysteine protease
CH_cre_23	0.000000720833	4	chromosome_7	27.1.2	RNA.processing.RNA helicase
CH_cre_24	0.000000776359	3	chromosome_7	13.1.5.1.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase
CH_cre_25	0.00000109621	5	chromosome_5	29.5.1	protein.degradation.subtilases
CH_cre_26	0.000001127	4	chromosome_4	11.2.1	lipid metabolism.FA desaturation.desaturase
CH_cre_27	0.00000299262	4	chromosome_14	29.5.3	protein.degradation.cysteine protease
CH_cre_28	0.0000042212	4	chromosome_17	24	Biodegradation of Xenobiotics
CH_cre_29	0.00000460315	4	chromosome_17	34.15	transport.potassium
CH_cre_3	3.9858e-24	18	chromosome_12	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_30	0.00000706627	3	chromosome_1	26.16	misc.myrosinases-lectin-jacalin
CH_cre_31	0.00000776082	3	chromosome_7	29.6.2.1.1	protein.folding.chaperones and co-chaperones.small HSPs.chaperones
CH_cre_32	0.00000776082	3	chromosome_9	29.2.99	protein.synthesis.misc
CH_cre_33	0.0000126536	4	chromosome_9	26.10	misc.cytochrome P450
CH_cre_34	0.0000185889	5	chromosome_12	31.6.1.10	cell.motility.eukaryotes.flagellar associated proteins
CH_cre_35	0.0000298958	3	chromosome_16	29.5.11.1	protein.degradation.ubiquitin.ubiquitin
CH_cre_36	0.0000567212	4	chromosome_13	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_37	0.0000788161	3	chromosome_2	29.6.2	protein.folding.chaperones and co-chaperones
CH_cre_38	0.0000788161	3	chromosome_11	24	Biodegradation of Xenobiotics
CH_cre_39	0.0000788161	3	chromosome_3	24	Biodegradation of Xenobiotics
CH_cre_4	5.60884e-16	16	chromosome_17	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_40	0.0000855105	4	chromosome_6	1.1.1.1	PS.lightreaction.photosystem II.LHC-II
CH_cre_41	0.000103786	4	chromosome_10	29.5.11.4.2	protein.degradation.ubiquitin.E3.RING
CH_cre_42	0.000113759	2	chromosome_9	16.1.3.1	secondary metabolism.isoprenoids.tocopherol biosynthesis.hydroxyphenylpyruvate dioxygenase
CH_cre_43	0.000113759	2	chromosome_1	16.1.3.4	secondary metabolism.isoprenoids.tocopherol biosynthesis.tocopherol cyclase
CH_cre_44	0.000113759	2	chromosome_2	1.3.2	PS.calvin cycle.rubisco small subunit
CH_cre_45	0.000113759	2	chromosome_3	23.4.4	nucleotide metabolism.phosphotransfer and pyrophosphatases.thymidylate kinase
CH_cre_46	0.000113759	2	chromosome_7	27.3.27	RNA.regulation of transcription.NAC domain transcription factor family
CH_cre_47	0.000113759	2	chromosome_3	3.2.4	minor CHO metabolism.trehalose.trehalase
CH_cre_48	0.000113759	2	chromosome_1	3.8.2	minor CHO metabolism.galactose.alpha-galactosidases
CH_cre_49	0.000113759	2	chromosome_9	26.28	misc.GDSL-motif lipase
CH_cre_5	0.00000000000000418967	16	chromosome_17	28.1.3	DNA.synthesis/chromatin structure.histone
CH_cre_50	0.000113759	2	chromosome_2	13.1.3.6.1.4	amino acid metabolism.synthesis.aspartate family.misc.homoserine.homoserine kinase
CH_cre_51	0.000177414	3	chromosome_16	26.10	misc.cytochrome P450
CH_cre_52	0.000177414	3	chromosome_7	26.10	misc.cytochrome P450
CH_cre_53	0.000201684	3	chromosome_16	34.7	transport.phosphate
CH_cre_54	0.000226885	3	chromosome_6	29.2.4	protein.synthesis.elongation
CH_cre_55	0.000279035	4	chromosome_8	34.16	transport.ABC transporters and multidrug resistance systems
CH_cre_56	0.000341258	2	chromosome_3	20.1.1	stress.biotic.respiratory burst
CH_cre_57	0.000341258	2	chromosome_16	29.1.5	protein.aa activation.isoleucine-tRNA ligase
CH_cre_58	0.000341278	2	chromosome_14	13.1.3.5.2	amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase
CH_cre_59	0.000341278	2	chromosome_2	11.8.10	lipid metabolism.exotics (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase
CH_cre_6	0.0000000000662592	4	chromosome_11	23.3.1.3	nucleotide metabolism.salvage.phosphoribosyltransferases.upp
CH_cre_60	0.000341278	2	chromosome_16	27.1.20	RNA.processing.degradation dicer
CH_cre_61	0.000426807	5	chromosome_8	34.14	transport.unspecified cations
CH_cre_62	0.000429023	3	chromosome_10	29.5.5	protein.degradation.serine protease
CH_cre_63	0.000663996	3	chromosome_1	26.1	misc.misc2
CH_cre_64	0.000682477	2	scaffold_18	23.1.2.2	nucleotide metabolism.synthesis.purine.GAR Synthetase
CH_cre_65	0.000682477	2	chromosome_13	23.1.2.8	nucleotide metabolism.synthesis.purine.SAICAR lyase
CH_cre_66	0.000682555	2	chromosome_6	1.1.70.1	PS.lightreaction.hydrogenase.FeFe-hydrogenase
CH_cre_67	0.000682555	2	chromosome_1	16.4.1	secondary metabolism.N misc.alkaloid-like
CH_cre_68	0.000682555	2	chromosome_13	27.3.18	RNA.regulation of transcription.E2F/DP transcription factor family
CH_cre_69	0.000682555	2	chromosome_9	30.2.99	signalling.receptor kinases.misc
CH_cre_7	0.000000000110421	4	chromosome_12	16.8.3	secondary metabolism.flavonoids.dihydroflavonols
CH_cre_70	0.000682555	2	chromosome_9	34.4	transport.nitrate
CH_cre_71	0.000682555	2	chromosome_2	32	micro RNA, natural antisense etc
CH_cre_72	0.000682555	2	chromosome_8	17.1.1.1.10	hormone metabolism.abscisic acid.synthesis-degradation.synthesis.9-cis-epoxycarotenoid dioxygenase
CH_cre_73	0.000782785	3	chromosome_14	8.2.10	TCA / org transformation.other organic acid transformatons.malic
CH_cre_74	0.000786256	3	chromosome_14	24	Biodegradation of Xenobiotics
CH_cre_75	0.000912553	3	chromosome_4	1.5.3	PS.carbon concentrating mechanism.algal
CH_cre_8	0.000000000154605	4	chromosome_16	5.3	fermentation.ADH
CH_cre_9	0.000000000331228	4	chromosome_6	24.1	Biodegradation of Xenobiotics.hydroxyacylglutathione hydrolase

Experiments Overview

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal	Cluster count
1	GO	Primary GO data only.	2	30	80	0.001	X	72
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X	80
3	GO	All GO data.	2	30	80	0.001	X	112
4	GO	Primary GO data only.	10	150	300	0.001	X	14
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X	18
6	GO	All GO data.	10	150	300	0.001	X	29
7	GO	Primary GO data only.	2	30	80	0.001	V	10
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V	9
9	GO	All GO data.	2	30	80	0.001	V	14
10	GO	Primary GO data only.	10	150	300	0.001	V	3
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V	2
12	GO	All GO data.	10	150	300	0.001	V	1
13	InterPro	No filter applied.	2	30	80	0.001	X	167
14	InterPro	No filter applied.	10	150	300	0.001	X	10
15	InterPro	No filter applied.	2	30	80	0.001	V	21
16	InterPro	No filter applied.	10	150	300	0.001	V	2
17	MapMan	No filter applied.	2	30	80	0.001	X	75
18	MapMan	No filter applied.	10	150	300	0.001	X	5
19	MapMan	No filter applied.	2	30	80	0.001	V	23
20	MapMan	No filter applied.	10	150	300	0.001	V	2