Functional clusters   top

Information

Type
GO term
Identifier
GO:1901363
Description
heterocyclic compound binding

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopodascaffold000023CH_atr_33720310.000658923
Amborella trichopodascaffold000613CH_atr_33530590.000632324
Amborella trichopodascaffold000616CH_atr_8730590.000632324
Arabidopsis thaliana54CH_ath_36982370.00000117162
Arabidopsis thaliana55CH_ath_52982370.0000014741
Arabidopsis thaliana26CH_ath_151852060.000550656
Arabidopsis thaliana56CH_ath_861062610.0000295848
Brassica rapaA095CH_bra_3047970.000183437
Brassica rapaA106CH_bra_3443750.0000354403
Citrullus lanatusChr21CH_cla_16918260.000319584
Citrullus lanatusChr22CH_cla_21330580.000402759
Citrullus lanatusChr24CH_cla_30902780.000108505
Citrullus lanatusChr25CH_cla_33932780.0000878143
Citrullus lanatusChr106CH_cla_52581350.000197937
Citrullus lanatusChr26CH_cla_63992800.000555581
Citrullus lanatusChr26CH_cla_5333600.000211428
Citrus sinensisscaffold001672CH_csi_11113130.0000794693
Citrus sinensisscaffold001674CH_csi_2213130.0000493314
Citrus sinensisscaffold001675CH_csi_2513130.0000794693
Citrus sinensisscaffold001676CH_csi_3613130.000340529
Cucumis meloCM3.5_scaffold000675CH_cme_39752340.000135057
Eucalyptus grandisscaffold_81CH_egr_57121290.000338738
Eucalyptus grandisscaffold_62CH_egr_47525320.00000151629
Eucalyptus grandisscaffold_82CH_egr_76521290.000590543
Eucalyptus grandisscaffold_43CH_egr_39630350.00000000772033
Eucalyptus grandisscaffold_63CH_egr_47127320.000000273619
Eucalyptus grandisscaffold_73CH_egr_77216170.000198626
Eucalyptus grandisscaffold_65CH_egr_20525320.00000151629
Eucalyptus grandisscaffold_46CH_egr_257721430.0000156569
Eucalyptus grandisscaffold_46CH_egr_18031360.00000000232803
Eucalyptus grandisscaffold_66CH_egr_21927320.000000273619
Glycine maxGm106CH_gma_751052350.0000112622
Gossypium raimondiiChr032CH_gra_26930480.00018358
Gossypium raimondiiChr033CH_gra_42430460.000827378
Gossypium raimondiiChr034CH_gra_7340760.000248514
Gossypium raimondiiChr035CH_gra_7630480.00018358
Gossypium raimondiiChr036CH_gra_9651960.000390335
Malus domestica11CH_mdo_12630670.0000465172
Malus domestica12CH_mdo_16830670.0000974357
Malus domestica14CH_mdo_9892940.0000000199224
Malus domestica15CH_mdo_10892940.000000111055
Malus domestica16CH_mdo_36922780.0000293855
Malus domestica110CH_mdo_1562580.00046226
Medicago truncatulachr42CH_mtr_57626610.000244539
Medicago truncatulachr33CH_mtr_70530620.000209811
Medicago truncatulachr33CH_mtr_66928550.000161574
Medicago truncatulachr24CH_mtr_117471400.0000011957
Medicago truncatulachr34CH_mtr_38942833.29034e-16
Medicago truncatulachr25CH_mtr_116491410.0000003915
Medicago truncatulachr35CH_mtr_45952830.00000000000000105852
Medicago truncatulachr36CH_mtr_22028550.000161574
Medicago truncatulachr36CH_mtr_611102830.00000000000000175826
Populus trichocarpaChr044CH_ptr_97601350.0000457973
Populus trichocarpaChr045CH_ptr_105601350.000177134
Prunus persicascaffold_14CH_ppe_116992650.000614396
Prunus persicascaffold_74CH_ppe_10736660.000379025
Prunus persicascaffold_75CH_ppe_12836660.000842401
Ricinus communis299101CH_rco_13930530.0000730444
Ricinus communis299102CH_rco_18130530.000183346
Ricinus communis299104CH_rco_2631550.0000462546
Ricinus communis299105CH_rco_2831550.000119446
Ricinus communis299106CH_rco_2839560.0000000155376
Solanum tuberosumchr023CH_stu_64930420.000213923
Solanum tuberosumchr026CH_stu_16933450.0000118964
Theobroma cacaoscaffold_54CH_tca_6242840.0000635495
Theobroma cacaoscaffold_55CH_tca_6243840.0000447689
Vitis viniferachr71CH_vvi_29028510.000552093
Vitis viniferachr74CH_vvi_10228510.000552093
Zea mays105CH_zma_31862520.0000666906
Zea mays106CH_zma_30962450.000011605

Available child term results

GO term Description Number of clusters
GO:0000049tRNA binding2
GO:0000166nucleotide binding38
GO:0000499base pairing with mRNA57
GO:0000774adenyl-nucleotide exchange factor activity4
GO:0000976transcription regulatory region sequence-specific DNA binding3
GO:0001164RNA polymerase I CORE element sequence-specific DNA binding1
GO:0003676nucleic acid binding73
GO:0003677DNA binding85
GO:0003684damaged DNA binding4
GO:0003689DNA clamp loader activity5
GO:0003723RNA binding22
GO:0003725double-stranded RNA binding5
GO:0003729mRNA binding1
GO:0003730mRNA 3'-UTR binding12
GO:0003746translation elongation factor activity47
GO:0003747translation release factor activity1
GO:0005524ATP binding54
GO:0005525GTP binding29
GO:0005542folic acid binding38
GO:00080975S rRNA binding7
GO:0008143poly(A) RNA binding4
GO:00083127S RNA binding1
GO:0008327methyl-CpG binding1
GO:0009374biotin binding2
GO:0010181FMN binding71
GO:0016149translation release factor activity, codon specific7
GO:0016168chlorophyll binding2
GO:0016208AMP binding3
GO:0017069snRNA binding9
GO:0017070U6 snRNA binding3
GO:0017076purine nucleotide binding9
GO:0019843rRNA binding12
GO:0020037heme binding272
GO:0030553cGMP binding3
GO:0030554adenyl nucleotide binding12
GO:0030619U1 snRNA binding4
GO:0030976thiamine pyrophosphate binding15
GO:0030983mismatched DNA binding1
GO:0032549ribonucleoside binding11
GO:0032553ribonucleotide binding14
GO:0032555purine ribonucleotide binding30
GO:0032559adenyl ribonucleotide binding76
GO:0035197siRNA binding3
GO:0035198miRNA binding4
GO:0035639purine ribonucleoside triphosphate binding18
GO:0043531ADP binding1129
GO:0043546molybdopterin cofactor binding9
GO:0043565sequence-specific DNA binding40
GO:0046906tetrapyrrole binding4
GO:0050660flavin adenine dinucleotide binding43
GO:0050661NADP binding7
GO:0051287NAD binding53
GO:0070401NADP+ binding25
GO:0070403NAD+ binding6
GO:00800845S rDNA binding4
GO:0097100supercoiled DNA binding10
GO:0097157pre-mRNA intronic binding6

Functional clusters experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1GOPrimary GO data only.230800.001X
2GOPrimary and orthology projected GO data.230800.001X
3GOAll GO data.230800.001X
4GOPrimary GO data only.101503000.001X
5GOPrimary and orthology projected GO data.101503000.001X
6GOAll GO data.101503000.001X
7GOPrimary GO data only.230800.001V
8GOPrimary and orthology projected GO data.230800.001V
9GOAll GO data.230800.001V
10GOPrimary GO data only.101503000.001V
11GOPrimary and orthology projected GO data.101503000.001V
12GOAll GO data.101503000.001V
13InterProNo filter applied.230800.001X
14InterProNo filter applied.101503000.001X
15InterProNo filter applied.230800.001V
16InterProNo filter applied.101503000.001V
17MapManNo filter applied.230800.001X
18MapManNo filter applied.101503000.001X
19MapManNo filter applied.230800.001V
20MapManNo filter applied.101503000.001V