View conserved binding sites


Gene
VV19G01880
Description
name=GSVIVG01014208001;
Alias
GSVIVG01014208001;GSVIVT01014208001;GSVIVG01014208001
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-110
Upstream-73
Matrix_105SPL14Not availableUpstream-84
Upstream-81
Upstream-80
Matrix_146ORA47Not availableUpstream-110
Matrix_147ERF3;AT1G80580Not availableUpstream-110
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-75
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-72
Matrix_180SPL1Not availableUpstream-76
Matrix_224ERF1Not availableUpstream-111
Matrix_234RAP2.3Not availableUpstream-110
Matrix_252RAP2.6Not availableUpstream-110
Matrix_261ATERF-1Not availableUpstream-110
Upstream-73
Matrix_287ERF2Not availableUpstream-110
Matrix_295ERF1Not availableUpstream-110
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-111
Upstream-74
Matrix_334AT3G23230Not availableUpstream-109
Matrix_342SPL14Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon ResonanceUpstream-81
Matrix_343AT2G33710Not availableUpstream-110
Matrix_344ATERF15;AT4G18450Not availableUpstream-110
Matrix_355ERF10;ERF11Not availableUpstream-111
Upstream-74
Matrix_360ORA59Not availableUpstream-110
Matrix_363RAP2.3Not availableUpstream-111
Matrix_374AT5G07580;AT5G61590Not availableUpstream-110
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-73
Matrix_378ATERF1Not availableUpstream-110
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-74
Matrix_406ATERF-7Not availableUpstream-112
Upstream-75
Matrix_409DEAR3Not availableUpstream-111
Upstream-74
Matrix_426CRF1;CRF2Not availableUpstream-109
Matrix_45DRNNot availableUpstream-110
Matrix_450SPL7Not availableUpstream-75
Matrix_462ATERF-8Not availableUpstream-112
Upstream-75
Matrix_484ATERF13Not availableUpstream-110
Matrix_493AT1G22985;AT1G71130Not availableUpstream-110
Upstream-73
Matrix_50ATERF14;AT5G43410Not availableUpstream-111
Upstream-74
Matrix_506DRNL;ATERF-4Not availableUpstream-109
Upstream-72
Matrix_517ERF12Not availableUpstream-110
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-111
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-109
Matrix_91CRF3Not availableUpstream-110
Upstream-73
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-84
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-109
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-114
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-73
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-163
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-127
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-93
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-114
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-127
Upstream-93