PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: VV01G13600
Description: name=GSVIVG01020190001;
Alias: GSVIVG01020190001;GSVIVT01020190001;GSVIVG01020190001

Binding site	Name	Description	Location	Position
Matrix_208	AP1	Not available	Upstream	-264
Matrix_29	AP1	Not available	Intron	25702
Motif_125	BOXIINTPATPB	Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter	Intron	25697
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	Intron	25705
			Intron	25931
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	Intron	25944
			Intron	25945
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	Intron	25695
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	Intron	25693
			Intron	25836
Motif_321	TATABOX5	TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis	Intron	25835
			Intron	26431
Motif_342	POLASIG1	PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis	Intron	26377
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	Intron	25945
Motif_575	TATABOX3	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene	Intron	25938
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	Intron	25824
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	Intron	25829
			Intron	25921
			Intron	26361
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	Intron	25829
			Intron	25921
			Intron	26361