Matrix_119 | RRTF1 | Not available | Downstream | 3613 |
Matrix_120 | BEE2 | Not available | Upstream | -286 |
Matrix_138 | RRTF1 | Not available | Downstream | 3613 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -286 |
| | | Upstream | -287 |
Matrix_146 | ORA47 | Not available | Downstream | 3612 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -286 |
Matrix_187 | CDC5 | Not available | Downstream | 3608 |
Matrix_224 | ERF1 | Not available | Downstream | 3613 |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | Downstream | 3608 |
Matrix_234 | RAP2.3 | Not available | Downstream | 3612 |
Matrix_261 | ATERF-1 | Not available | Downstream | 3612 |
Matrix_264 | ATAREB1 | Not available | Upstream | -286 |
| | | Upstream | -297 |
Matrix_287 | ERF2 | Not available | Downstream | 3612 |
Matrix_288 | RAP2.3 | Not available | Downstream | 3613 |
Matrix_295 | ERF1 | Not available | Downstream | 3612 |
Matrix_320 | MYC4 | Not available | Upstream | -287 |
Matrix_323 | BIM3 | Not available | Upstream | -286 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Downstream | 3613 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -286 |
| | | Upstream | -300 |
Matrix_334 | AT3G23230 | Not available | Downstream | 3611 |
Matrix_343 | AT2G33710 | Not available | Downstream | 3612 |
Matrix_349 | CDC5 | Not available | Downstream | 3608 |
Matrix_355 | ERF10;ERF11 | Not available | Downstream | 3613 |
Matrix_360 | ORA59 | Not available | Downstream | 3612 |
Matrix_363 | RAP2.3 | Not available | Downstream | 3613 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Downstream | 3612 |
Matrix_378 | ATERF1 | Not available | Downstream | 3612 |
Matrix_406 | ATERF-7 | Not available | Downstream | 3614 |
Matrix_426 | CRF1;CRF2 | Not available | Downstream | 3611 |
Matrix_449 | BIM2 | Not available | Upstream | -286 |
Matrix_462 | ATERF-8 | Not available | Downstream | 3614 |
Matrix_465 | MYC4 | Not available | Upstream | -286 |
| | | Upstream | -300 |
Matrix_473 | RRTF1 | Not available | Downstream | 3612 |
Matrix_480 | BES1 | Not available | Upstream | -285 |
| | | Upstream | -286 |
| | | Upstream | -299 |
| | | Upstream | -300 |
Matrix_484 | ATERF13 | Not available | Downstream | 3612 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Downstream | 3612 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Downstream | 3613 |
Matrix_53 | MYC3 | Not available | Upstream | -284 |
| | | Upstream | -288 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Downstream | 3611 |
Matrix_90 | BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915 | Not available | Upstream | -287 |
Matrix_91 | CRF3 | Not available | Downstream | 3612 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 3625 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -152 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -287 |
| | | Upstream | -301 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 3594 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -157 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Downstream | 3611 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Downstream | 3611 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -158 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Upstream | -371 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Downstream | 3633 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Downstream | 3612 |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | Downstream | 3586 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3620 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 3620 |