View conserved binding sites

Endonuclease/exonuclease/phosphatase family (AHRD V1 ***- B2SN06_XANOP)
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-30
Matrix_138RRTF1Not availableUpstream-30
Matrix_146ORA47Not availableUpstream-31
Matrix_187CDC5Not availableUpstream-35
Matrix_224ERF1Not availableUpstream-30
Matrix_229CDC5A cdc5+ homolog of a higher plant, Arabidopsis thalianaUpstream-35
Matrix_234RAP2.3Not availableUpstream-31
Matrix_261ATERF-1Not availableUpstream-31
Matrix_287ERF2Not availableUpstream-31
Matrix_288RAP2.3Not availableUpstream-30
Matrix_295ERF1Not availableUpstream-31
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-30
Matrix_334AT3G23230Not availableUpstream-32
Matrix_343AT2G33710Not availableUpstream-31
Matrix_349CDC5Not availableUpstream-35
Matrix_355ERF10;ERF11Not availableUpstream-30
Matrix_360ORA59Not availableUpstream-31
Matrix_363RAP2.3Not availableUpstream-30
Matrix_374AT5G07580;AT5G61590Not availableUpstream-31
Matrix_378ATERF1Not availableUpstream-31
Matrix_406ATERF-7Not availableUpstream-29
Matrix_426CRF1;CRF2Not availableUpstream-32
Matrix_462ATERF-8Not availableUpstream-29
Matrix_473RRTF1Not availableUpstream-31
Matrix_484ATERF13Not availableUpstream-31
Matrix_493AT1G22985;AT1G71130Not availableUpstream-31
Matrix_50ATERF14;AT5G43410Not availableUpstream-30
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-32
Matrix_91CRF3Not availableUpstream-31
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-18
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-49
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-32
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-32
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneUpstream-10
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-31
Motif_606NAPINMOTIFBNSequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seedsUpstream-57
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-23
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-23