View conserved binding sites

assembly protein Ycf4
Binding siteNameDescriptionLocationPosition
Matrix_380ATMYR1Not availableDownstream823
Matrix_416ASL5Not availableDownstream824
Motif_199GCN4OSGLUB1GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expressionDownstream794
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-99
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-316
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream801
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesDownstream787
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream802
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-290
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsDownstream823
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-304
Motif_606NAPINMOTIFBNSequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seedsDownstream756
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream786
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoDownstream792
Motif_683AtMYB2 BS in RD22Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionDownstream786
Motif_80AP1SV40AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Downstream794