View conserved binding sites

Probable RNA-binding protein EIF1AD
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableDownstream2107
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream2107
Matrix_109GBF3Not availableDownstream2107
Matrix_113ABI5Not availableDownstream2107
Matrix_120BEE2Not availableDownstream2108
Matrix_122ABF1;AREB2Not availableDownstream2107
Matrix_129ABF1Not availableDownstream2108
Matrix_14ZCW32;AT5G62610Not availableDownstream2108
Matrix_145GBF4;AT5G44080Not availableDownstream2109
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorDownstream2104
Matrix_156POC1Not availableDownstream2107
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-506
Matrix_186FHY3Not availableUpstream-506
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingDownstream2105
Matrix_192FHY3/FAR1Not availableDownstream2105
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableDownstream2108
Matrix_214AP1Not availableDownstream2106
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream2105
Matrix_247PIF3Not availableDownstream2108
Matrix_259AT1G50680;AT1G51120Not availableDownstream2108
Matrix_264ATAREB1Not availableDownstream2105
Matrix_296GBF2Not availableDownstream2108
Matrix_300bZIP68;bZIP16Not availableDownstream2108
Matrix_301PIL5Not availableDownstream2109
Matrix_331GBF1Not availableDownstream2107
Matrix_332SPT;ALCNot availableDownstream2108
Matrix_339bHLH104Not availableDownstream2108
Matrix_389ILR3Not availableDownstream2108
Matrix_403BZR1Not availableDownstream2106
Matrix_414AGL15Not availableUpstream-126
Matrix_443AGL15Not availableDownstream2106
Matrix_55PIF3Not availableDownstream2107
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-149
Matrix_64PIF5Not availableDownstream2109
Matrix_7PIF4Not availableDownstream2108
Matrix_77PRR5Not availableDownstream2106
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream2110
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream2110
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFDownstream2108
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-504
Motif_244ABRE-like binding site motifNot availableDownstream2108
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementDownstream2108
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABADownstream2108
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-503
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream2110
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-1097
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyDownstream2109
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataDownstream2107
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaDownstream2109
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationDownstream2108
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisDownstream2108
Motif_638ABRE binding site motifNot availableDownstream2108
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Downstream2111
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Intron360