View conserved binding sites


Gene
GM17G17400
Description
Protein SHORT-ROOT
Alias
Glyma17g17400;Glyma17g17400.1;PAC:26312303;Glyma17g17400.1
Binding siteNameDescriptionLocationPosition
Matrix_10STY1Not availableUpstream-575
Matrix_101ERF5Not availableUpstream-856
Upstream-857
Matrix_147ERF3;AT1G80580Not availableUpstream-856
Upstream-857
Matrix_151ASIL1Not availableUpstream-855
Upstream-856
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-855
Upstream-856
Upstream-857
Upstream-858
Matrix_206CUC1;ANAC100Not availableUpstream-786
Upstream-787
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-786
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-788
Matrix_320MYC4Not availableDownstream1573
Matrix_332SPT;ALCNot availableDownstream1573
Matrix_344ATERF15;AT4G18450Not availableUpstream-856
Upstream-857
Matrix_355ERF10;ERF11Not availableUpstream-855
Upstream-856
Matrix_374AT5G07580;AT5G61590Not availableUpstream-855
Upstream-856
Upstream-857
Matrix_39AP1Not availableUpstream-1424
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-855
Matrix_406ATERF-7Not availableUpstream-854
Upstream-855
Matrix_41anac058Not availableUpstream-786
Upstream-787
Matrix_433ATERF1Not availableUpstream-855
Upstream-856
Matrix_437MYC2Not availableDownstream1573
Matrix_448ATERF6Not availableUpstream-855
Upstream-856
Matrix_45DRNNot availableUpstream-856
Upstream-857
Matrix_462ATERF-8Not availableUpstream-854
Upstream-855
Matrix_476bHLH115;bHLH34Not availableDownstream1573
Matrix_48PINot availableUpstream-748
Upstream-838
Matrix_484ATERF13Not availableUpstream-856
Upstream-857
Matrix_5AT5G51190;ERF104Not availableUpstream-856
Upstream-857
Matrix_50ATERF14;AT5G43410Not availableUpstream-855
Matrix_53MYC3Not availableDownstream1594
Downstream1572
Matrix_60AT1G01260;AT5G57150Not availableDownstream1573
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-796
Matrix_7PIF4Not availableDownstream1594
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-193
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-816
Upstream-818
Upstream-820
Upstream-822
Upstream-824
Upstream-826
Upstream-828
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-84
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsDownstream1593
Downstream1571
Upstream-916
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-614
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-619
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-780
Motif_177-300MOTIFZMZEINMotif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bindUpstream-863
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream1594
Downstream1572
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-797
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-961
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1594
Downstream1572
Upstream-797
Motif_199GCN4OSGLUB1GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expressionUpstream-864
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream1594
Downstream1573
Downstream1572
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-89
Upstream-797
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream1573
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-886
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-13
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-797
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream1594
Downstream1572
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-14
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-803
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-816
Upstream-818
Upstream-820
Upstream-822
Upstream-824
Upstream-826
Upstream-828
Upstream-830
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream1570
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-759
Motif_512GLMHVCHORDGLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoterUpstream-863
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-917
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-776
Motif_637SARD1;CBP60gControl of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factorsUpstream-953
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-1425
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-620
Upstream-846
Upstream-957
Upstream-973
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-620
Upstream-973
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-691
Upstream-693
Upstream-747
Upstream-817
Upstream-819
Upstream-821
Upstream-823
Upstream-825
Upstream-827
Upstream-829
Upstream-831
Upstream-833
Upstream-835
Upstream-837
Motif_80AP1SV40AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-864
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-880
Upstream-909