Matrix_10 | STY1 | Not available | Upstream | -575 |
Matrix_101 | ERF5 | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_151 | ASIL1 | Not available | Upstream | -855 |
| | | Upstream | -856 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -855 |
| | | Upstream | -856 |
| | | Upstream | -857 |
| | | Upstream | -858 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -786 |
| | | Upstream | -787 |
Matrix_257 | NAC050;ANAC051;anac057;NAC2 | Not available | Upstream | -786 |
Matrix_268 | EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105 | Not available | Upstream | -788 |
Matrix_320 | MYC4 | Not available | Downstream | 1573 |
Matrix_332 | SPT;ALC | Not available | Downstream | 1573 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -855 |
| | | Upstream | -856 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -855 |
| | | Upstream | -856 |
| | | Upstream | -857 |
Matrix_39 | AP1 | Not available | Upstream | -1424 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -855 |
Matrix_406 | ATERF-7 | Not available | Upstream | -854 |
| | | Upstream | -855 |
Matrix_41 | anac058 | Not available | Upstream | -786 |
| | | Upstream | -787 |
Matrix_433 | ATERF1 | Not available | Upstream | -855 |
| | | Upstream | -856 |
Matrix_437 | MYC2 | Not available | Downstream | 1573 |
Matrix_448 | ATERF6 | Not available | Upstream | -855 |
| | | Upstream | -856 |
Matrix_45 | DRN | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_462 | ATERF-8 | Not available | Upstream | -854 |
| | | Upstream | -855 |
Matrix_476 | bHLH115;bHLH34 | Not available | Downstream | 1573 |
Matrix_48 | PI | Not available | Upstream | -748 |
| | | Upstream | -838 |
Matrix_484 | ATERF13 | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -856 |
| | | Upstream | -857 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -855 |
Matrix_53 | MYC3 | Not available | Downstream | 1594 |
| | | Downstream | 1572 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Downstream | 1573 |
Matrix_68 | AtMYB77 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84 | Upstream | -796 |
Matrix_7 | PIF4 | Not available | Downstream | 1594 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -193 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -816 |
| | | Upstream | -818 |
| | | Upstream | -820 |
| | | Upstream | -822 |
| | | Upstream | -824 |
| | | Upstream | -826 |
| | | Upstream | -828 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -84 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Downstream | 1593 |
| | | Downstream | 1571 |
| | | Upstream | -916 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -614 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -619 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -780 |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | Upstream | -863 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 1594 |
| | | Downstream | 1572 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -797 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -961 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 1594 |
| | | Downstream | 1572 |
| | | Upstream | -797 |
Motif_199 | GCN4OSGLUB1 | GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression | Upstream | -864 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 1594 |
| | | Downstream | 1573 |
| | | Downstream | 1572 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -89 |
| | | Upstream | -797 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Downstream | 1573 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -886 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -13 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -797 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 1594 |
| | | Downstream | 1572 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -14 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -803 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -816 |
| | | Upstream | -818 |
| | | Upstream | -820 |
| | | Upstream | -822 |
| | | Upstream | -824 |
| | | Upstream | -826 |
| | | Upstream | -828 |
| | | Upstream | -830 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 1570 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -759 |
Motif_512 | GLMHVCHORD | GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter | Upstream | -863 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -917 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -776 |
Motif_637 | SARD1;CBP60g | Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors | Upstream | -953 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -1425 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -620 |
| | | Upstream | -846 |
| | | Upstream | -957 |
| | | Upstream | -973 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -620 |
| | | Upstream | -973 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -691 |
| | | Upstream | -693 |
| | | Upstream | -747 |
| | | Upstream | -817 |
| | | Upstream | -819 |
| | | Upstream | -821 |
| | | Upstream | -823 |
| | | Upstream | -825 |
| | | Upstream | -827 |
| | | Upstream | -829 |
| | | Upstream | -831 |
| | | Upstream | -833 |
| | | Upstream | -835 |
| | | Upstream | -837 |
Motif_80 | AP1SV40 | AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -864 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -880 |
| | | Upstream | -909 |