View conserved binding sites


Gene
GM16G33370
Description
Eukaryotic translation initiation factor 6
Alias
Glyma16g33370;Glyma16g33370.4;PAC:26353483;Glyma16g33370.4
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-699
Upstream-698
Matrix_110ATABI4;AT3G57600Not availableUpstream-699
Upstream-698
Matrix_119RRTF1Not availableUpstream-697
Matrix_138RRTF1Not availableUpstream-697
Matrix_146ORA47Not availableUpstream-699
Upstream-698
Matrix_147ERF3;AT1G80580Not availableUpstream-699
Upstream-696
Matrix_151ASIL1Not availableUpstream-703
Upstream-697
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-697
Matrix_169E2F1Not availableUpstream-699
Matrix_190ATERF1Not availableUpstream-699
Upstream-698
Matrix_224ERF1Not availableUpstream-700
Upstream-697
Matrix_234RAP2.3Not availableUpstream-701
Upstream-699
Upstream-698
Matrix_243RAP2.12;RAP2.2Not availableUpstream-697
Matrix_252RAP2.6Not availableUpstream-701
Upstream-699
Upstream-698
Matrix_261ATERF-1Not availableUpstream-697
Matrix_272DEAR4Not availableUpstream-699
Upstream-698
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-699
Matrix_287ERF2Not availableUpstream-699
Upstream-698
Matrix_288RAP2.3Not availableUpstream-697
Matrix_295ERF1Not availableUpstream-696
Matrix_321HRDNot availableUpstream-697
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-700
Upstream-697
Matrix_334AT3G23230Not availableUpstream-700
Upstream-697
Matrix_343AT2G33710Not availableUpstream-699
Upstream-698
Matrix_344ATERF15;AT4G18450Not availableUpstream-696
Matrix_355ERF10;ERF11Not availableUpstream-697
Matrix_360ORA59Not availableUpstream-696
Matrix_363RAP2.3Not availableUpstream-697
Matrix_374AT5G07580;AT5G61590Not availableUpstream-700
Upstream-699
Upstream-697
Upstream-696
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-697
Matrix_378ATERF1Not availableUpstream-699
Upstream-698
Matrix_396AP3Not availableUpstream-1538
Matrix_406ATERF-7Not availableUpstream-696
Matrix_409DEAR3Not availableUpstream-700
Upstream-697
Matrix_426CRF1;CRF2Not availableUpstream-700
Upstream-697
Matrix_448ATERF6Not availableUpstream-703
Upstream-697
Matrix_45DRNNot availableUpstream-699
Upstream-696
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-697
Matrix_473RRTF1Not availableUpstream-702
Upstream-701
Upstream-699
Upstream-698
Matrix_484ATERF13Not availableUpstream-696
Matrix_493AT1G22985;AT1G71130Not availableUpstream-697
Matrix_5AT5G51190;ERF104Not availableUpstream-696
Matrix_50ATERF14;AT5G43410Not availableUpstream-700
Upstream-697
Matrix_506DRNL;ATERF-4Not availableUpstream-700
Upstream-697
Matrix_517ERF12Not availableUpstream-699
Upstream-696
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-700
Upstream-697
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-698
Upstream-697
Matrix_91CRF3Not availableUpstream-697
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-729
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-1537
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-745
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-695
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-1536
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-744
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-805
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-742