Matrix_101 | ERF5 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_119 | RRTF1 | Not available | Upstream | -697 |
Matrix_138 | RRTF1 | Not available | Upstream | -697 |
Matrix_146 | ORA47 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -699 |
| | | Upstream | -696 |
Matrix_151 | ASIL1 | Not available | Upstream | -703 |
| | | Upstream | -697 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -697 |
Matrix_169 | E2F1 | Not available | Upstream | -699 |
Matrix_190 | ATERF1 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_224 | ERF1 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_234 | RAP2.3 | Not available | Upstream | -701 |
| | | Upstream | -699 |
| | | Upstream | -698 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -697 |
Matrix_252 | RAP2.6 | Not available | Upstream | -701 |
| | | Upstream | -699 |
| | | Upstream | -698 |
Matrix_261 | ATERF-1 | Not available | Upstream | -697 |
Matrix_272 | DEAR4 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -699 |
Matrix_287 | ERF2 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_288 | RAP2.3 | Not available | Upstream | -697 |
Matrix_295 | ERF1 | Not available | Upstream | -696 |
Matrix_321 | HRD | Not available | Upstream | -697 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_334 | AT3G23230 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_343 | AT2G33710 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -696 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -697 |
Matrix_360 | ORA59 | Not available | Upstream | -696 |
Matrix_363 | RAP2.3 | Not available | Upstream | -697 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -700 |
| | | Upstream | -699 |
| | | Upstream | -697 |
| | | Upstream | -696 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -697 |
Matrix_378 | ATERF1 | Not available | Upstream | -699 |
| | | Upstream | -698 |
Matrix_396 | AP3 | Not available | Upstream | -1538 |
Matrix_406 | ATERF-7 | Not available | Upstream | -696 |
Matrix_409 | DEAR3 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_448 | ATERF6 | Not available | Upstream | -703 |
| | | Upstream | -697 |
Matrix_45 | DRN | Not available | Upstream | -699 |
| | | Upstream | -696 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -697 |
Matrix_473 | RRTF1 | Not available | Upstream | -702 |
| | | Upstream | -701 |
| | | Upstream | -699 |
| | | Upstream | -698 |
Matrix_484 | ATERF13 | Not available | Upstream | -696 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -697 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -696 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_517 | ERF12 | Not available | Upstream | -699 |
| | | Upstream | -696 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -700 |
| | | Upstream | -697 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -698 |
| | | Upstream | -697 |
Matrix_91 | CRF3 | Not available | Upstream | -697 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -729 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -1537 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -745 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -695 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1536 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -744 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -805 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -742 |