View conserved binding sites


Gene
GM16G00900
Description
Uncharacterized ATP-dependent helicase C29A10.10c
Alias
Glyma16g00900;Glyma16g00900.2;PAC:26353107;Glyma16g00900.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1314
Upstream-1315
Upstream-1418
Upstream-1579
Upstream-1582
Matrix_146ORA47Not availableUpstream-1418
Upstream-1579
Upstream-1582
Matrix_151ASIL1Not availableUpstream-1313
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-1330
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1315
Matrix_165KNAT1Not availableUpstream-1278
Matrix_234RAP2.3Not availableUpstream-1418
Upstream-1579
Upstream-1582
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1315
Matrix_252RAP2.6Not availableUpstream-1418
Upstream-1582
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-1277
Matrix_261ATERF-1Not availableUpstream-1579
Upstream-1582
Matrix_272DEAR4Not availableUpstream-1418
Upstream-1579
Upstream-1582
Matrix_287ERF2Not availableUpstream-1314
Matrix_288RAP2.3Not availableUpstream-1419
Upstream-1581
Matrix_295ERF1Not availableUpstream-1420
Upstream-1582
Matrix_334AT3G23230Not availableUpstream-1315
Upstream-1316
Upstream-1419
Upstream-1580
Upstream-1583
Matrix_344ATERF15;AT4G18450Not availableUpstream-1314
Matrix_355ERF10;ERF11Not availableUpstream-1419
Upstream-1578
Upstream-1581
Matrix_360ORA59Not availableUpstream-1582
Matrix_363RAP2.3Not availableUpstream-1419
Upstream-1581
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1314
Upstream-1315
Upstream-1582
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1579
Upstream-1582
Matrix_378ATERF1Not availableUpstream-1418
Upstream-1582
Matrix_387ORA47Not availableUpstream-1330
Upstream-1331
Upstream-1577
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-1314
Upstream-1315
Upstream-1330
Upstream-1331
Upstream-1578
Matrix_418KNAT6;KNAT2Not availableUpstream-1277
Matrix_426CRF1;CRF2Not availableUpstream-1419
Upstream-1580
Upstream-1583
Matrix_433ATERF1Not availableUpstream-1313
Matrix_448ATERF6Not availableUpstream-1313
Matrix_473RRTF1Not availableUpstream-1417
Upstream-1418
Upstream-1582
Matrix_482AT2G25650;AT4G00270Not availableUpstream-1316
Upstream-1317
Matrix_484ATERF13Not availableUpstream-1582
Matrix_5AT5G51190;ERF104Not availableUpstream-1314
Matrix_59AT4G00238;AT4G00250Not availableUpstream-1313
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1419
Upstream-1580
Upstream-1583
Motif_12CEREGLUBOX2PSLEGAcereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)Upstream-1324
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-1285
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-1339
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-500
Upstream-684
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-521
Upstream-850
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-3
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-1339
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-195
Upstream-676
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-1339
Motif_382CATATGGMSAURSequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsivenessUpstream-3
Motif_419MYB4 binding site motifNot availableUpstream-259
Upstream-462
Upstream-684
Upstream-696
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-1348
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1294
Upstream-1349
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1078
Upstream-1207
Upstream-1222
Upstream-1224
Upstream-1226
Upstream-1228
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-267
Upstream-391
Upstream-464
Upstream-740