Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -132 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -219 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -135 |
| | | Upstream | -134 |
Matrix_120 | BEE2 | Not available | Upstream | -131 |
Matrix_129 | ABF1 | Not available | Upstream | -131 |
Matrix_133 | DYT1 | Not available | Upstream | -234 |
Matrix_153 | AP2 | Not available | Upstream | -132 |
Matrix_156 | POC1 | Not available | Upstream | -130 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -131 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -108 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -131 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -115 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -131 |
Matrix_232 | TCP23 | Not available | Upstream | -116 |
Matrix_24 | POC1 | Not available | Upstream | -126 |
Matrix_247 | PIF3 | Not available | Upstream | -131 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -131 |
Matrix_332 | SPT;ALC | Not available | Upstream | -130 |
Matrix_345 | POC1 | Not available | Upstream | -135 |
| | | Upstream | -134 |
Matrix_348 | AT5G51910 | Not available | Upstream | -117 |
Matrix_40 | TCP2 | Not available | Upstream | -117 |
Matrix_401 | MYB55 | Not available | Upstream | -105 |
Matrix_42 | AT2G45680 | Not available | Upstream | -117 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -133 |
Matrix_449 | BIM2 | Not available | Upstream | -131 |
Matrix_465 | MYC4 | Not available | Upstream | -131 |
Matrix_480 | BES1 | Not available | Upstream | -132 |
| | | Upstream | -131 |
Matrix_496 | ATMYB15 | Not available | Upstream | -104 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -108 |
Matrix_514 | DYT1 | Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development | Upstream | -231 |
Matrix_53 | MYC3 | Not available | Upstream | -129 |
Matrix_55 | PIF3 | Not available | Upstream | -132 |
Matrix_64 | PIF5 | Not available | Upstream | -130 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -129 |
Matrix_7 | PIF4 | Not available | Upstream | -129 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -228 |
| | | Upstream | -226 |
| | | Upstream | -130 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -227 |
| | | Upstream | -129 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -227 |
| | | Upstream | -202 |
| | | Upstream | -178 |
| | | Upstream | -129 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -129 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -137 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -227 |
| | | Upstream | -129 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -129 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Downstream | 2157 |
Motif_476 | XYLAT | cis-element identified among the promoters of the core xylem gene set | Upstream | -190 |
Motif_619 | SITEIIBOSPCNA | Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes | Upstream | -116 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -138 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -107 |