View conserved binding sites

No description available
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-132
Matrix_110ATABI4;AT3G57600Not availableUpstream-219
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-135
Matrix_120BEE2Not availableUpstream-131
Matrix_129ABF1Not availableUpstream-131
Matrix_133DYT1Not availableUpstream-234
Matrix_153AP2Not availableUpstream-132
Matrix_156POC1Not availableUpstream-130
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-131
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-108
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-131
Matrix_196TCP20;AT5G41030Not availableUpstream-115
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-131
Matrix_232TCP23Not availableUpstream-116
Matrix_24POC1Not availableUpstream-126
Matrix_247PIF3Not availableUpstream-131
Matrix_330MYC2;TT8Not availableUpstream-131
Matrix_332SPT;ALCNot availableUpstream-130
Matrix_345POC1Not availableUpstream-135
Matrix_348AT5G51910Not availableUpstream-117
Matrix_40TCP2Not availableUpstream-117
Matrix_401MYB55Not availableUpstream-105
Matrix_42AT2G45680Not availableUpstream-117
Matrix_438AtbZIP63Not availableUpstream-133
Matrix_449BIM2Not availableUpstream-131
Matrix_465MYC4Not availableUpstream-131
Matrix_480BES1Not availableUpstream-132
Matrix_496ATMYB15Not availableUpstream-104
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-108
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-231
Matrix_53MYC3Not availableUpstream-129
Matrix_55PIF3Not availableUpstream-132
Matrix_64PIF5Not availableUpstream-130
Matrix_65POC1;PIL1Not availableUpstream-129
Matrix_7PIF4Not availableUpstream-129
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-228
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-227
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-227
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-129
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-137
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-227
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-129
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneDownstream2157
Motif_476XYLATcis-element identified among the promoters of the core xylem gene setUpstream-190
Motif_619SITEIIBOSPCNASite IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genesUpstream-116
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-138
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-107