View conserved binding sites


Gene
GM09G22270
Description
TIFY 6B
Alias
Glyma09g22270;Glyma09g22270.1;PAC:26342482;Glyma09g22270.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-378
Upstream-379
Matrix_113ABI5Not availableUpstream-489
Upstream-1273
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-376
Upstream-377
Upstream-484
Upstream-485
Upstream-1270
Upstream-1271
Matrix_120BEE2Not availableUpstream-379
Upstream-380
Upstream-473
Upstream-488
Matrix_122ABF1;AREB2Not availableUpstream-473
Upstream-487
Matrix_129ABF1Not availableUpstream-379
Upstream-380
Upstream-488
Matrix_134ABF1Not availableUpstream-489
Matrix_14ZCW32;AT5G62610Not availableUpstream-379
Upstream-380
Upstream-381
Upstream-474
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-484
Matrix_150UNE10;PIF7Not availableUpstream-380
Upstream-381
Matrix_153AP2Not availableUpstream-378
Matrix_156POC1Not availableUpstream-380
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-379
Upstream-380
Upstream-473
Upstream-488
Matrix_181Dof5.7Not availableIntron1772
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-376
Upstream-377
Upstream-380
Upstream-470
Upstream-473
Upstream-485
Upstream-488
Matrix_192FHY3/FAR1Not availableUpstream-489
Matrix_196TCP20;AT5G41030Not availableUpstream-1040
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-379
Upstream-380
Upstream-488
Matrix_214AP1Not availableUpstream-486
Matrix_233MYC3Not availableUpstream-380
Upstream-381
Matrix_24POC1Not availableUpstream-484
Upstream-1270
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-427
Matrix_247PIF3Not availableUpstream-488
Upstream-1274
Matrix_264ATAREB1Not availableUpstream-485
Upstream-488
Matrix_27ATAIB;ATNIG1Not availableUpstream-381
Matrix_297TCP15Not availableUpstream-411
Matrix_320MYC4Not availableUpstream-380
Upstream-381
Upstream-474
Matrix_323BIM3Not availableUpstream-379
Upstream-380
Upstream-473
Matrix_330MYC2;TT8Not availableUpstream-379
Upstream-380
Upstream-473
Upstream-488
Matrix_332SPT;ALCNot availableUpstream-379
Upstream-380
Upstream-381
Upstream-473
Upstream-489
Matrix_338AP2Not availableUpstream-485
Matrix_345POC1Not availableUpstream-376
Upstream-484
Upstream-485
Upstream-1270
Upstream-1271
Matrix_356PRR5Not availableUpstream-481
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-380
Upstream-381
Upstream-474
Matrix_369AT2G18300Not availableUpstream-379
Upstream-380
Upstream-471
Matrix_389ILR3Not availableUpstream-379
Upstream-380
Upstream-473
Upstream-488
Matrix_403BZR1Not availableUpstream-486
Matrix_437MYC2Not availableUpstream-380
Upstream-381
Upstream-474
Matrix_443AGL15Not availableUpstream-486
Matrix_449BIM2Not availableUpstream-379
Upstream-380
Upstream-473
Matrix_465MYC4Not availableUpstream-379
Upstream-380
Upstream-473
Upstream-488
Matrix_476bHLH115;bHLH34Not availableUpstream-380
Upstream-381
Upstream-474
Matrix_480BES1Not availableUpstream-473
Upstream-488
Matrix_507TCP3Not availableUpstream-411
Matrix_53MYC3Not availableUpstream-381
Upstream-382
Upstream-471
Matrix_55PIF3Not availableUpstream-378
Upstream-379
Upstream-487
Matrix_60AT1G01260;AT5G57150Not availableUpstream-380
Upstream-381
Upstream-474
Upstream-489
Matrix_64PIF5Not availableUpstream-380
Upstream-381
Matrix_65POC1;PIL1Not availableUpstream-380
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-427
Matrix_77PRR5Not availableUpstream-378
Upstream-379
Matrix_80BIM1Not availableUpstream-380
Upstream-381
Matrix_92AT1G33760Not availableUpstream-426
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-281
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-382
Upstream-473
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-381
Upstream-474
Upstream-489
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-381
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-361
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-380
Upstream-381
Upstream-473
Upstream-474
Upstream-488
Upstream-489
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-345
Upstream-357
Motif_244ABRE-like binding site motifNot availableUpstream-489
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-353
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-269
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-285
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-381
Upstream-474
Upstream-489
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-284
Motif_425ANAC013;ANAC016;ANAC017;ANAC053;ANAC078A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thalianaUpstream-268
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneUpstream-279
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-380
Upstream-489
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-427
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-383
Upstream-472
Upstream-476
Upstream-487
Upstream-1310
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-292
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-283
Upstream-285
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-490
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-427
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-71
Upstream-371
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-292
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-40