Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -378 |
| | | Upstream | -379 |
Matrix_113 | ABI5 | Not available | Upstream | -489 |
| | | Upstream | -1273 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -376 |
| | | Upstream | -377 |
| | | Upstream | -484 |
| | | Upstream | -485 |
| | | Upstream | -1270 |
| | | Upstream | -1271 |
Matrix_120 | BEE2 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
| | | Upstream | -488 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -473 |
| | | Upstream | -487 |
Matrix_129 | ABF1 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -488 |
Matrix_134 | ABF1 | Not available | Upstream | -489 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -484 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -380 |
| | | Upstream | -381 |
Matrix_153 | AP2 | Not available | Upstream | -378 |
Matrix_156 | POC1 | Not available | Upstream | -380 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
| | | Upstream | -488 |
Matrix_181 | Dof5.7 | Not available | Intron | 1772 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -376 |
| | | Upstream | -377 |
| | | Upstream | -380 |
| | | Upstream | -470 |
| | | Upstream | -473 |
| | | Upstream | -485 |
| | | Upstream | -488 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -489 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -1040 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -488 |
Matrix_214 | AP1 | Not available | Upstream | -486 |
Matrix_233 | MYC3 | Not available | Upstream | -380 |
| | | Upstream | -381 |
Matrix_24 | POC1 | Not available | Upstream | -484 |
| | | Upstream | -1270 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -427 |
Matrix_247 | PIF3 | Not available | Upstream | -488 |
| | | Upstream | -1274 |
Matrix_264 | ATAREB1 | Not available | Upstream | -485 |
| | | Upstream | -488 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -381 |
Matrix_297 | TCP15 | Not available | Upstream | -411 |
Matrix_320 | MYC4 | Not available | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
Matrix_323 | BIM3 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
| | | Upstream | -488 |
Matrix_332 | SPT;ALC | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -473 |
| | | Upstream | -489 |
Matrix_338 | AP2 | Not available | Upstream | -485 |
Matrix_345 | POC1 | Not available | Upstream | -376 |
| | | Upstream | -484 |
| | | Upstream | -485 |
| | | Upstream | -1270 |
| | | Upstream | -1271 |
Matrix_356 | PRR5 | Not available | Upstream | -481 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
Matrix_369 | AT2G18300 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -471 |
Matrix_389 | ILR3 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
| | | Upstream | -488 |
Matrix_403 | BZR1 | Not available | Upstream | -486 |
Matrix_437 | MYC2 | Not available | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
Matrix_443 | AGL15 | Not available | Upstream | -486 |
Matrix_449 | BIM2 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
Matrix_465 | MYC4 | Not available | Upstream | -379 |
| | | Upstream | -380 |
| | | Upstream | -473 |
| | | Upstream | -488 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
Matrix_480 | BES1 | Not available | Upstream | -473 |
| | | Upstream | -488 |
Matrix_507 | TCP3 | Not available | Upstream | -411 |
Matrix_53 | MYC3 | Not available | Upstream | -381 |
| | | Upstream | -382 |
| | | Upstream | -471 |
Matrix_55 | PIF3 | Not available | Upstream | -378 |
| | | Upstream | -379 |
| | | Upstream | -487 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -474 |
| | | Upstream | -489 |
Matrix_64 | PIF5 | Not available | Upstream | -380 |
| | | Upstream | -381 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -380 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -427 |
Matrix_77 | PRR5 | Not available | Upstream | -378 |
| | | Upstream | -379 |
Matrix_80 | BIM1 | Not available | Upstream | -380 |
| | | Upstream | -381 |
Matrix_92 | AT1G33760 | Not available | Upstream | -426 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -281 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -382 |
| | | Upstream | -473 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -381 |
| | | Upstream | -474 |
| | | Upstream | -489 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -381 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Upstream | -361 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -380 |
| | | Upstream | -381 |
| | | Upstream | -473 |
| | | Upstream | -474 |
| | | Upstream | -488 |
| | | Upstream | -489 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -345 |
| | | Upstream | -357 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -489 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -353 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -269 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -285 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -381 |
| | | Upstream | -474 |
| | | Upstream | -489 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -284 |
Motif_425 | ANAC013;ANAC016;ANAC017;ANAC053;ANAC078 | A membrane-bound NAC transcription factor is a regulator of mitochondrial retrograde regulation involved in oxidative stress responses in Arabidopsis thaliana | Upstream | -268 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Upstream | -279 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -380 |
| | | Upstream | -489 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -427 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -383 |
| | | Upstream | -472 |
| | | Upstream | -476 |
| | | Upstream | -487 |
| | | Upstream | -1310 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -292 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -283 |
| | | Upstream | -285 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -490 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -427 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -71 |
| | | Upstream | -371 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -292 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -40 |