Matrix_104 | PI | Not available | Upstream | -135 |
Matrix_113 | ABI5 | Not available | Upstream | -135 |
| | | Upstream | -137 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -135 |
| | | Upstream | -136 |
Matrix_129 | ABF1 | Not available | Upstream | -136 |
Matrix_134 | ABF1 | Not available | Upstream | -136 |
| | | Upstream | -137 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -133 |
| | | Upstream | -137 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -137 |
Matrix_264 | ATAREB1 | Not available | Upstream | -133 |
| | | Upstream | -136 |
Matrix_338 | AP2 | Not available | Upstream | -133 |
Matrix_359 | FLC | Not available | Upstream | -134 |
Matrix_389 | ILR3 | Not available | Upstream | -136 |
Matrix_396 | AP3 | Not available | Upstream | -107 |
Matrix_403 | BZR1 | Not available | Upstream | -134 |
Matrix_443 | AGL15 | Not available | Upstream | -134 |
Matrix_480 | BES1 | Not available | Upstream | -136 |
Matrix_7 | PIF4 | Not available | Upstream | -136 |
| | | Upstream | -138 |
Matrix_77 | PRR5 | Not available | Upstream | -134 |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | Upstream | -73 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -42 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -718 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -107 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -42 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -700 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -953 |
| | | Upstream | -1118 |
| | | Upstream | -1568 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -135 |
| | | Upstream | -138 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -47 |