View conserved binding sites


Gene
GM06G15550
Description
H2 finger protein ATL78
Alias
Glyma06g15550;Glyma06g15550.1;PAC:26300685;Glyma06g15550.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-507
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-507
Matrix_109GBF3Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_113ABI5Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-504
Upstream-505
Matrix_120BEE2Not availableUpstream-507
Upstream-508
Matrix_122ABF1;AREB2Not availableUpstream-507
Upstream-508
Matrix_129ABF1Not availableUpstream-507
Upstream-508
Matrix_134ABF1Not availableUpstream-507
Upstream-508
Matrix_14ZCW32;AT5G62610Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_145GBF4;AT5G44080Not availableUpstream-508
Upstream-509
Matrix_156POC1Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-507
Upstream-508
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-688
Matrix_192FHY3/FAR1Not availableUpstream-505
Upstream-509
Matrix_194HYH;HY5Not availableUpstream-505
Upstream-1183
Matrix_196TCP20;AT5G41030Not availableUpstream-688
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-507
Upstream-508
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-505
Upstream-509
Upstream-1180
Matrix_232TCP23Not availableUpstream-687
Upstream-688
Upstream-853
Matrix_233MYC3Not availableUpstream-508
Upstream-509
Matrix_24POC1Not availableUpstream-504
Matrix_247PIF3Not availableUpstream-507
Upstream-508
Matrix_259AT1G50680;AT1G51120Not availableUpstream-507
Upstream-508
Matrix_264ATAREB1Not availableUpstream-505
Upstream-508
Matrix_281TCP13Not availableUpstream-1498
Matrix_296GBF2Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_297TCP15Not availableUpstream-687
Upstream-688
Upstream-853
Matrix_300bZIP68;bZIP16Not availableUpstream-507
Upstream-508
Upstream-509
Upstream-1180
Matrix_301PIL5Not availableUpstream-503
Upstream-509
Matrix_323BIM3Not availableUpstream-507
Matrix_330MYC2;TT8Not availableUpstream-507
Matrix_331GBF1Not availableUpstream-507
Upstream-508
Upstream-509
Matrix_332SPT;ALCNot availableUpstream-507
Upstream-508
Upstream-509
Upstream-691
Upstream-692
Matrix_338AP2Not availableUpstream-505
Matrix_339bHLH104Not availableUpstream-507
Upstream-508
Matrix_345POC1Not availableUpstream-504
Upstream-505
Upstream-687
Upstream-688
Matrix_348AT5G51910Not availableUpstream-687
Upstream-854
Upstream-855
Matrix_356PRR5Not availableUpstream-501
Upstream-505
Matrix_369AT2G18300Not availableUpstream-507
Matrix_389ILR3Not availableUpstream-507
Upstream-508
Matrix_40TCP2Not availableUpstream-459
Matrix_403BZR1Not availableUpstream-506
Matrix_42AT2G45680Not availableUpstream-687
Upstream-854
Matrix_438AtbZIP63Not availableUpstream-507
Matrix_443AGL15Not availableUpstream-506
Matrix_449BIM2Not availableUpstream-507
Matrix_465MYC4Not availableUpstream-507
Matrix_53MYC3Not availableUpstream-509
Matrix_55PIF3Not availableUpstream-507
Matrix_60AT1G01260;AT5G57150Not availableUpstream-508
Upstream-509
Matrix_64PIF5Not availableUpstream-508
Upstream-509
Matrix_65POC1;PIL1Not availableUpstream-508
Upstream-509
Matrix_7PIF4Not availableUpstream-507
Upstream-508
Upstream-509
Upstream-510
Matrix_77PRR5Not availableUpstream-506
Upstream-507
Matrix_80BIM1Not availableUpstream-508
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-468
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiUpstream-322
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-699
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-509
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-439
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-509
Upstream-699
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-77
Upstream-269
Upstream-667
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-507
Upstream-508
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-508
Upstream-509
Motif_244ABRE-like binding site motifNot availableUpstream-507
Upstream-509
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-507
Upstream-509
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-507
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-509
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-60
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-699
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-508
Upstream-509
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-508
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-507
Upstream-510
Upstream-1181
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-460
Upstream-462
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-507
Upstream-510
Motif_638ABRE binding site motifNot availableUpstream-507
Upstream-509
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-506
Upstream-510
Upstream-1181
Motif_94UP1ATMSDUp1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-457
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-442