Matrix_119 | RRTF1 | Not available | Upstream | -482 |
Matrix_138 | RRTF1 | Not available | Upstream | -482 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -483 |
Matrix_151 | ASIL1 | Not available | Upstream | -482 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -17 |
| | | Upstream | -482 |
| | | Upstream | -484 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -482 |
Matrix_261 | ATERF-1 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_272 | DEAR4 | Not available | Upstream | -147 |
| | | Upstream | -482 |
Matrix_288 | RAP2.3 | Not available | Upstream | -482 |
Matrix_321 | HRD | Not available | Upstream | -17 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_334 | AT3G23230 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -483 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_362 | DEAR3 | Not available | Upstream | -436 |
Matrix_363 | RAP2.3 | Not available | Upstream | -146 |
| | | Upstream | -482 |
| | | Upstream | -483 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_385 | DEAR4 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_394 | DREB_U | Not available | Upstream | -17 |
Matrix_406 | ATERF-7 | Not available | Upstream | -483 |
Matrix_409 | DEAR3 | Not available | Upstream | -14 |
| | | Upstream | -17 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -17 |
| | | Upstream | -18 |
| | | Upstream | -148 |
Matrix_433 | ATERF1 | Not available | Upstream | -482 |
Matrix_448 | ATERF6 | Not available | Upstream | -482 |
Matrix_45 | DRN | Not available | Upstream | -483 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_462 | ATERF-8 | Not available | Upstream | -483 |
Matrix_484 | ATERF13 | Not available | Upstream | -483 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -147 |
| | | Upstream | -482 |
| | | Upstream | -483 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -483 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -17 |
| | | Upstream | -482 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -17 |
| | | Upstream | -18 |
| | | Upstream | -148 |
| | | Upstream | -482 |
| | | Upstream | -483 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -18 |
Matrix_59 | AT4G00238;AT4G00250 | Not available | Upstream | -482 |
Matrix_61 | ATCBF3 | Not available | Upstream | -17 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -482 |
Matrix_91 | CRF3 | Not available | Upstream | -482 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 3745 |
| | | Downstream | 3624 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Upstream | -489 |
| | | Upstream | -499 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -489 |
| | | Upstream | -499 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 3781 |
| | | Downstream | 3560 |
| | | Downstream | 3524 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 3782 |
| | | Downstream | 3764 |
| | | Downstream | 3628 |
| | | Downstream | 3525 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 3763 |
| | | Downstream | 3627 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -19 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -489 |
| | | Upstream | -499 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -19 |
| | | Upstream | -319 |
| | | Upstream | -438 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -502 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Downstream | 3591 |
Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -319 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -19 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3767 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Downstream | 3570 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Upstream | -319 |
| | | Upstream | -438 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3695 |
| | | Upstream | -27 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3767 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -27 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Downstream | 3820 |
| | | Downstream | 3765 |
| | | Downstream | 3527 |