View conserved binding sites


Gene
GM04G31770
Description
Polygalacturonate 4-alpha-galacturonosyltransferase
Alias
Glyma04g31770;Glyma04g31770.1;PAC:26305559;Glyma04g31770.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-482
Matrix_138RRTF1Not availableUpstream-482
Matrix_147ERF3;AT1G80580Not availableUpstream-483
Matrix_151ASIL1Not availableUpstream-482
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-17
Upstream-482
Upstream-484
Matrix_243RAP2.12;RAP2.2Not availableUpstream-482
Matrix_261ATERF-1Not availableUpstream-17
Upstream-482
Matrix_272DEAR4Not availableUpstream-147
Upstream-482
Matrix_288RAP2.3Not availableUpstream-482
Matrix_321HRDNot availableUpstream-17
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-17
Upstream-482
Matrix_334AT3G23230Not availableUpstream-17
Upstream-482
Matrix_344ATERF15;AT4G18450Not availableUpstream-483
Matrix_355ERF10;ERF11Not availableUpstream-17
Upstream-482
Matrix_362DEAR3Not availableUpstream-436
Matrix_363RAP2.3Not availableUpstream-146
Upstream-482
Upstream-483
Matrix_374AT5G07580;AT5G61590Not availableUpstream-482
Upstream-483
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-17
Upstream-482
Matrix_385DEAR4Not availableUpstream-17
Upstream-482
Matrix_394DREB_UNot availableUpstream-17
Matrix_406ATERF-7Not availableUpstream-483
Matrix_409DEAR3Not availableUpstream-14
Upstream-17
Matrix_426CRF1;CRF2Not availableUpstream-17
Upstream-18
Upstream-148
Matrix_433ATERF1Not availableUpstream-482
Matrix_448ATERF6Not availableUpstream-482
Matrix_45DRNNot availableUpstream-483
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-17
Upstream-482
Matrix_462ATERF-8Not availableUpstream-483
Matrix_484ATERF13Not availableUpstream-483
Matrix_493AT1G22985;AT1G71130Not availableUpstream-147
Upstream-482
Upstream-483
Matrix_5AT5G51190;ERF104Not availableUpstream-483
Matrix_50ATERF14;AT5G43410Not availableUpstream-17
Upstream-482
Matrix_506DRNL;ATERF-4Not availableUpstream-17
Upstream-18
Upstream-148
Upstream-482
Upstream-483
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-18
Matrix_59AT4G00238;AT4G00250Not availableUpstream-482
Matrix_61ATCBF3Not availableUpstream-17
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-482
Matrix_91CRF3Not availableUpstream-482
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxDownstream3745
Downstream3624
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-489
Upstream-499
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-489
Upstream-499
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream3781
Downstream3560
Downstream3524
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream3782
Downstream3764
Downstream3628
Downstream3525
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream3763
Downstream3627
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-19
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-489
Upstream-499
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-19
Upstream-319
Upstream-438
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-502
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaDownstream3591
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-319
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-19
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3767
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoDownstream3570
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-319
Upstream-438
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3695
Upstream-27
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3767
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-27
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneDownstream3820
Downstream3765
Downstream3527