View conserved binding sites


Gene
GM02G44890
Description
No description available
Alias
Glyma02g44890;Glyma02g44890.1;PAC:26289844;Glyma02g44890.1
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-186
Upstream-187
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-188
Upstream-189
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-186
Matrix_209RAP2.6Not availableUpstream-209
Upstream-210
Matrix_237MYB55Not availableUpstream-761
Matrix_244DREB2CNot availableUpstream-189
Upstream-190
Matrix_263WRKY33;WRKY19;WRKY32Not availableUpstream-200
Matrix_3WRKY48Not availableUpstream-200
Upstream-201
Matrix_315MYB111Not availableUpstream-189
Upstream-190
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-190
Upstream-191
Matrix_385DEAR4Not availableUpstream-189
Upstream-190
Matrix_387ORA47Not availableUpstream-188
Upstream-189
Matrix_394DREB_UNot availableUpstream-189
Upstream-190
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-189
Upstream-190
Matrix_401MYB55Not availableUpstream-189
Upstream-190
Matrix_409DEAR3Not availableUpstream-189
Matrix_448ATERF6Not availableUpstream-210
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-189
Upstream-190
Matrix_455MYB111Not availableUpstream-189
Upstream-190
Matrix_478AT1G01250Not availableUpstream-190
Upstream-191
Matrix_5AT5G51190;ERF104Not availableUpstream-211
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-186
Upstream-187
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-190
Upstream-191
Matrix_75WRKY29Not availableUpstream-200
Matrix_92AT1G33760Not availableUpstream-189
Upstream-190
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-227
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-233
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-190
Upstream-1572
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-803
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-191
Upstream-1573
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-191
Upstream-1573
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-202
Upstream-1638
Upstream-1841
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-191
Upstream-1573
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-10
Upstream-221
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-10
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-24