View conserved binding sites


Gene
GM02G44860
Description
SHI RELATED SEQUENCE
Alias
Glyma02g44860;Glyma02g44860.2;PAC:26287905;Glyma02g44860.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-18
Upstream-19
Matrix_110ATABI4;AT3G57600Not availableUpstream-19
Upstream-20
Upstream-64
Upstream-65
Upstream-69
Upstream-70
Matrix_115AGL15Not availableUpstream-605
Matrix_119RRTF1Not availableUpstream-17
Upstream-18
Upstream-71
Upstream-72
Matrix_126RBENot availableUpstream-1149
Matrix_128TGA2Not availableDownstream2171
Matrix_138RRTF1Not availableUpstream-71
Upstream-72
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-3
Upstream-4
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1171
Upstream-1273
Matrix_186FHY3Not availableUpstream-1170
Upstream-1272
Matrix_190ATERF1Not availableUpstream-19
Upstream-20
Matrix_196TCP20;AT5G41030Not availableUpstream-6
Upstream-7
Matrix_224ERF1Not availableUpstream-3
Upstream-17
Upstream-18
Upstream-20
Upstream-21
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableUpstream-34
Matrix_232TCP23Not availableUpstream-28
Matrix_234RAP2.3Not availableUpstream-18
Upstream-19
Matrix_24POC1Not availableUpstream-8
Upstream-64
Matrix_243RAP2.12;RAP2.2Not availableUpstream-19
Matrix_25AP3Not availableUpstream-465
Upstream-806
Matrix_252RAP2.6Not availableUpstream-3
Upstream-4
Upstream-18
Upstream-19
Upstream-21
Upstream-22
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-64
Matrix_269FHY3/FAR1Not availableUpstream-605
Upstream-608
Upstream-1068
Matrix_277RAP2.6Not availableUpstream-17
Upstream-18
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-26
Upstream-27
Matrix_282bZIP60Not availableUpstream-1144
Matrix_287ERF2Not availableUpstream-18
Upstream-19
Matrix_288RAP2.3Not availableUpstream-71
Upstream-72
Matrix_295ERF1Not availableUpstream-18
Upstream-19
Matrix_297TCP15Not availableUpstream-7
Upstream-8
Upstream-28
Upstream-29
Matrix_298RAV1Not availableUpstream-12
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-57
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGDownstream2173
Matrix_311TGA1Not availableDownstream2171
Matrix_321HRDNot availableUpstream-18
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-17
Upstream-18
Matrix_334AT3G23230Not availableUpstream-19
Upstream-20
Matrix_343AT2G33710Not availableUpstream-3
Upstream-4
Upstream-18
Upstream-19
Upstream-21
Upstream-22
Matrix_348AT5G51910Not availableUpstream-8
Upstream-26
Upstream-27
Matrix_355ERF10;ERF11Not availableUpstream-17
Matrix_360ORA59Not availableUpstream-21
Matrix_363RAP2.3Not availableUpstream-17
Upstream-18
Upstream-71
Upstream-72
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-1062
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-3
Upstream-4
Matrix_378ATERF1Not availableUpstream-18
Upstream-19
Upstream-70
Upstream-71
Matrix_399TGA1Not availableDownstream2172
Matrix_405DREB2CNot availableUpstream-19
Upstream-20
Upstream-72
Upstream-73
Matrix_409DEAR3Not availableUpstream-3
Matrix_413RAV1Not availableUpstream-12
Matrix_414AGL15Not availableUpstream-441
Upstream-442
Matrix_42AT2G45680Not availableUpstream-8
Upstream-9
Upstream-26
Upstream-27
Upstream-28
Upstream-1164
Matrix_426CRF1;CRF2Not availableUpstream-19
Upstream-20
Matrix_433ATERF1Not availableUpstream-17
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-3
Matrix_473RRTF1Not availableUpstream-18
Upstream-19
Upstream-70
Upstream-71
Matrix_48PINot availableUpstream-1019
Upstream-1020
Upstream-1068
Upstream-1069
Matrix_488ABF1Not availableUpstream-11
Upstream-58
Matrix_489RAV1Not availableUpstream-14
Matrix_50ATERF14;AT5G43410Not availableUpstream-17
Upstream-18
Upstream-20
Upstream-21
Matrix_506DRNL;ATERF-4Not availableUpstream-19
Upstream-20
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-3
Upstream-4
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-1137
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-3
Upstream-14
Upstream-15
Upstream-20
Upstream-21
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-1275
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-959
Upstream-966
Upstream-1182
Motif_12CEREGLUBOX2PSLEGAcereal glutenin box in pea legumin gene (legA); sequence homologous to the cereal glutenin gene control element (-300 element)Downstream2245
Upstream-963
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-252
Upstream-258
Upstream-1108
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-1141
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-1004
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-165
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-165
Upstream-1141
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-165
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-654
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream1878
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-19
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-71
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-255
Upstream-261
Upstream-924
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-165
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-250
Upstream-256
Upstream-262
Upstream-923
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisDownstream2156
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-60
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream1870
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-632
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1141
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteDownstream2169
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-160
Upstream-641
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Downstream2167
Upstream-144
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-58
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-659
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-607
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsDownstream2169
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-1152
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-58
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1097
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-253
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneDownstream1813
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-25
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1879
Upstream-442
Upstream-927
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterDownstream1812
Motif_668TCA1MOTIFTCA-1 (tobacco nuclear protein 1) binding site; Related to salicylic acid-inducible expression of many genes; Found in barley beta-1,3-glucanase and over 30 different plant genes which are known to be induced by one or more forms of stress; A similar sequence (TCATTTCTT) was found in tobacco Tnt1 retrotransposon promoterUpstream-864
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1097
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-927
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-566
Upstream-703
Upstream-705
Upstream-813
Upstream-845
Upstream-847
Upstream-1023
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorDownstream2139
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-698
Upstream-1182
Upstream-1502
Upstream-1506
Upstream-1510
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-975