| Matrix_101 | ERF5 | Not available | Upstream | -1117 |
| Matrix_109 | GBF3 | Not available | Upstream | -1309 |
| Matrix_129 | ABF1 | Not available | Upstream | -1308 |
| Matrix_134 | ABF1 | Not available | Upstream | -1308 |
| Matrix_190 | ATERF1 | Not available | Upstream | -1140 |
| Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1311 |
| Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1311 |
| Matrix_224 | ERF1 | Not available | Upstream | -1134 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -1140 |
| Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -1137 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -1117 |
| Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1308 |
| Matrix_331 | GBF1 | Not available | Upstream | -1309 |
| Matrix_378 | ATERF1 | Not available | Upstream | -1133 |
| Matrix_380 | ATMYR1 | Not available | Upstream | -1272 |
| Matrix_387 | ORA47 | Not available | Upstream | -1119 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -1119 |
| Matrix_409 | DEAR3 | Not available | Upstream | -1134 |
| Matrix_416 | ASL5 | Not available | Upstream | -1139 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -1119 |
| Matrix_47 | AtMYB77 | Not available | Upstream | -1133 |
| Matrix_480 | BES1 | Not available | Upstream | -1309 |
| Matrix_484 | ATERF13 | Not available | Upstream | -1117 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1134 |
| Matrix_55 | PIF3 | Not available | Upstream | -1309 |
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1137 |
| | | Upstream | -1134 |
| Matrix_65 | POC1;PIL1 | Not available | Upstream | -1307 |
| Matrix_7 | PIF4 | Not available | Upstream | -1308 |
| Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -1168 |
| Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1306 |
| Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1306 |
| Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -1308 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1307 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1308 |
| Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -1308 |
| Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -1136 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1306 |
| Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -645 |
| Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -1307 |
| Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1308 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1308 |
| Motif_638 | ABRE binding site motif | Not available | Upstream | -1308 |
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