View conserved binding sites


Gene
GM01G42200
Description
uridylyltransferase/uridylyl-removing enzyme
Alias
Glyma01g42200;Glyma01g42200.1;PAC:26324433;Glyma01g42200.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-724
Upstream-774
Upstream-828
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-382
Upstream-828
Upstream-892
Upstream-893
Matrix_109GBF3Not availableUpstream-773
Upstream-774
Upstream-828
Upstream-830
Matrix_111ABF3Not availableUpstream-725
Upstream-726
Matrix_113ABI5Not availableUpstream-723
Upstream-724
Upstream-726
Upstream-773
Upstream-774
Upstream-828
Upstream-830
Matrix_115AGL15Not availableUpstream-137
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-772
Upstream-825
Upstream-826
Matrix_120BEE2Not availableUpstream-774
Upstream-775
Upstream-829
Upstream-893
Upstream-894
Matrix_122ABF1;AREB2Not availableUpstream-723
Upstream-724
Upstream-725
Upstream-773
Upstream-774
Upstream-828
Upstream-829
Matrix_129ABF1Not availableUpstream-724
Upstream-725
Upstream-774
Upstream-775
Upstream-829
Matrix_134ABF1Not availableUpstream-724
Upstream-725
Upstream-726
Upstream-775
Upstream-776
Upstream-829
Matrix_14ZCW32;AT5G62610Not availableUpstream-829
Matrix_145GBF4;AT5G44080Not availableUpstream-775
Upstream-776
Upstream-830
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-721
Upstream-771
Upstream-825
Matrix_153AP2Not availableUpstream-382
Upstream-892
Upstream-893
Matrix_156POC1Not availableUpstream-776
Upstream-828
Upstream-830
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-774
Upstream-775
Upstream-829
Upstream-893
Upstream-894
Matrix_192FHY3/FAR1Not availableUpstream-721
Upstream-722
Upstream-726
Upstream-771
Upstream-772
Upstream-826
Matrix_194HYH;HY5Not availableUpstream-722
Upstream-772
Upstream-826
Matrix_196TCP20;AT5G41030Not availableDownstream2748
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-774
Upstream-775
Upstream-829
Matrix_214AP1Not availableUpstream-723
Upstream-827
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-721
Upstream-722
Upstream-771
Upstream-772
Upstream-826
Matrix_233MYC3Not availableUpstream-830
Matrix_24POC1Not availableUpstream-721
Upstream-771
Upstream-825
Matrix_247PIF3Not availableUpstream-774
Upstream-775
Upstream-829
Matrix_259AT1G50680;AT1G51120Not availableUpstream-829
Matrix_264ATAREB1Not availableUpstream-722
Upstream-725
Upstream-771
Upstream-772
Upstream-826
Upstream-829
Matrix_269FHY3/FAR1Not availableUpstream-131
Upstream-134
Upstream-137
Matrix_27ATAIB;ATNIG1Not availableUpstream-894
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableDownstream2745
Matrix_296GBF2Not availableUpstream-774
Upstream-775
Upstream-829
Upstream-830
Matrix_297TCP15Not availableDownstream2747
Downstream2744
Matrix_300bZIP68;bZIP16Not availableUpstream-774
Upstream-775
Upstream-829
Upstream-830
Matrix_301PIL5Not availableUpstream-719
Upstream-720
Upstream-726
Upstream-769
Upstream-770
Upstream-824
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-827
Matrix_320MYC4Not availableUpstream-894
Matrix_323BIM3Not availableUpstream-893
Upstream-894
Matrix_330MYC2;TT8Not availableUpstream-774
Upstream-775
Upstream-893
Upstream-894
Matrix_331GBF1Not availableUpstream-773
Upstream-774
Upstream-828
Upstream-830
Matrix_332SPT;ALCNot availableUpstream-775
Upstream-776
Upstream-829
Upstream-830
Upstream-893
Upstream-894
Matrix_338AP2Not availableUpstream-722
Upstream-772
Upstream-826
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-406
Matrix_345POC1Not availableUpstream-772
Upstream-825
Upstream-826
Matrix_348AT5G51910Not availableDownstream2746
Matrix_356PRR5Not availableUpstream-718
Upstream-722
Upstream-772
Upstream-822
Upstream-826
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-894
Upstream-895
Matrix_369AT2G18300Not availableUpstream-891
Upstream-892
Matrix_389ILR3Not availableUpstream-724
Upstream-725
Upstream-774
Upstream-775
Upstream-829
Matrix_403BZR1Not availableUpstream-723
Upstream-773
Upstream-827
Matrix_415WRKY27Not availableUpstream-409
Matrix_443AGL15Not availableUpstream-723
Upstream-773
Upstream-827
Matrix_449BIM2Not availableUpstream-893
Upstream-894
Matrix_465MYC4Not availableUpstream-774
Upstream-775
Upstream-893
Upstream-894
Matrix_467RAV1Not availableUpstream-406
Upstream-407
Matrix_477RAV1Not availableUpstream-406
Upstream-407
Matrix_48PINot availableUpstream-360
Upstream-923
Matrix_480BES1Not availableUpstream-723
Upstream-724
Upstream-725
Upstream-773
Upstream-774
Upstream-775
Matrix_488ABF1Not availableUpstream-717
Upstream-774
Upstream-828
Matrix_53MYC3Not availableUpstream-827
Upstream-891
Upstream-892
Matrix_55PIF3Not availableUpstream-382
Upstream-774
Upstream-828
Matrix_60AT1G01260;AT5G57150Not availableUpstream-775
Matrix_64PIF5Not availableUpstream-830
Upstream-894
Upstream-895
Matrix_65POC1;PIL1Not availableUpstream-776
Matrix_7PIF4Not availableUpstream-724
Upstream-725
Upstream-726
Upstream-727
Upstream-774
Upstream-775
Upstream-776
Upstream-777
Upstream-829
Matrix_72CDF2Not availableUpstream-916
Matrix_77PRR5Not availableUpstream-724
Upstream-773
Upstream-827
Upstream-828
Matrix_80BIM1Not availableUpstream-773
Upstream-774
Upstream-828
Upstream-892
Upstream-893
Matrix_97APRR2Not availableIntron392
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-934
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-1885
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-894
Upstream-896
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-384
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-726
Upstream-776
Upstream-830
Upstream-895
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream2736
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream2725
Upstream-384
Upstream-726
Upstream-776
Upstream-895
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-774
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-828
Motif_213ZML2The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in ArabidopsisDownstream2673
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-107
Upstream-725
Upstream-726
Upstream-775
Upstream-776
Upstream-829
Upstream-830
Upstream-894
Upstream-1328
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-816
Motif_244ABRE-like binding site motifNot availableUpstream-724
Upstream-726
Upstream-774
Upstream-828
Upstream-830
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-725
Upstream-726
Upstream-775
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream2678
Downstream2656
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream2603
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-821
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-882
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-828
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream2691
Downstream2686
Downstream2681
Upstream-821
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream2661
Upstream-849
Upstream-899
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-173
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1889
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-759
Upstream-833
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-726
Upstream-776
Upstream-895
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1888
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-156
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream2679
Motif_395RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-896
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-384
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-776
Upstream-829
Upstream-830
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-942
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-869
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-858
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-829
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-893
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-864
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream2657
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-765
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-118
Upstream-121
Upstream-124
Upstream-127
Upstream-130
Upstream-133
Upstream-136
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-828
Motif_564MYB98MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteinsDownstream2692
Downstream2687
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-888
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-869
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceDownstream2621
Motif_606NAPINMOTIFBNSequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seedsDownstream2928
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-434
Upstream-437
Upstream-494
Upstream-564
Upstream-1172
Upstream-1338
Upstream-1527
Upstream-1815
Upstream-1816
Upstream-1817
Upstream-1818
Upstream-1887
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-724
Upstream-727
Upstream-774
Upstream-828
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream2936
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-411
Upstream-859
Motif_638ABRE binding site motifNot availableUpstream-828
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-947
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-299
Upstream-850
Upstream-920
Upstream-921
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-920
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-724
Upstream-727
Upstream-774
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Downstream2689
Downstream2684