Matrix_101 | ERF5 | Not available | Upstream | -692 |
Matrix_104 | PI | Not available | Downstream | 1479 |
Matrix_11 | TRFL5 | Not available | Upstream | -915 |
Matrix_120 | BEE2 | Not available | Downstream | 1480 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Downstream | 1480 |
| | | Downstream | 1481 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -690 |
Matrix_151 | ASIL1 | Not available | Upstream | -691 |
Matrix_153 | AP2 | Not available | Downstream | 1479 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -691 |
| | | Upstream | -689 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Downstream | 1480 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Downstream | 1480 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -638 |
Matrix_233 | MYC3 | Not available | Downstream | 1481 |
Matrix_320 | MYC4 | Not available | Downstream | 1481 |
Matrix_323 | BIM3 | Not available | Downstream | 1480 |
Matrix_330 | MYC2;TT8 | Not available | Downstream | 1480 |
Matrix_339 | bHLH104 | Not available | Downstream | 1480 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -690 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -691 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Downstream | 1481 |
Matrix_369 | AT2G18300 | Not available | Downstream | 1480 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -691 |
| | | Upstream | -690 |
Matrix_389 | ILR3 | Not available | Downstream | 1480 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -690 |
Matrix_398 | TBP2;ATTRB2 | Not available | Upstream | -915 |
Matrix_406 | ATERF-7 | Not available | Upstream | -690 |
Matrix_41 | anac058 | Not available | Upstream | -638 |
Matrix_414 | AGL15 | Not available | Upstream | -680 |
| | | Upstream | -678 |
Matrix_433 | ATERF1 | Not available | Upstream | -691 |
Matrix_439 | AP3 | Not available | Upstream | -707 |
Matrix_448 | ATERF6 | Not available | Upstream | -691 |
Matrix_449 | BIM2 | Not available | Downstream | 1480 |
Matrix_45 | DRN | Not available | Upstream | -690 |
Matrix_462 | ATERF-8 | Not available | Upstream | -690 |
Matrix_465 | MYC4 | Not available | Downstream | 1480 |
Matrix_480 | BES1 | Not available | Downstream | 1479 |
Matrix_484 | ATERF13 | Not available | Upstream | -690 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -690 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -691 |
Matrix_53 | MYC3 | Not available | Downstream | 1482 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Downstream | 1481 |
Matrix_7 | PIF4 | Not available | Downstream | 1480 |
| | | Downstream | 1482 |
Matrix_80 | BIM1 | Not available | Downstream | 1481 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -519 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -87 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -537 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -544 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -629 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Upstream | -312 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -91 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -1685 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -91 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -800 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -364 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -343 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -718 |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | Upstream | -550 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -546 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -91 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 1672 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -800 |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | Upstream | -550 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -552 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -1474 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -895 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -1672 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -746 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -550 |
Motif_614 | MYBGAHV | Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression | Upstream | -550 |
Motif_649 | 2SSEEDPROTBANAPA | Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter | Upstream | -780 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1685 |
| | | Upstream | -1684 |
| | | Upstream | -1674 |
| | | Upstream | -1489 |
| | | Upstream | -1488 |
| | | Upstream | -806 |
| | | Upstream | -543 |
| | | Downstream | 1508 |
| | | Downstream | 1673 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -550 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -1684 |
| | | Upstream | -1674 |
| | | Upstream | -1489 |
| | | Upstream | -806 |
| | | Upstream | -543 |
| | | Downstream | 1508 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -672 |
| | | Upstream | -670 |
| | | Upstream | -668 |
| | | Upstream | -666 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -780 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -712 |
| | | Upstream | -346 |