Matrix_101 | ERF5 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1721 |
Matrix_104 | PI | Not available | Upstream | -814 |
| | | Upstream | -815 |
Matrix_109 | GBF3 | Not available | Upstream | -814 |
| | | Upstream | -816 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -840 |
| | | Upstream | -1339 |
Matrix_113 | ABI5 | Not available | Upstream | -814 |
| | | Upstream | -815 |
| | | Upstream | -816 |
| | | Upstream | -817 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -812 |
Matrix_119 | RRTF1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1341 |
| | | Upstream | -1342 |
Matrix_120 | BEE2 | Not available | Upstream | -815 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_129 | ABF1 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_134 | ABF1 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_138 | RRTF1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1341 |
| | | Upstream | -1342 |
| | | Upstream | -1722 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -816 |
| | | Upstream | -817 |
Matrix_146 | ORA47 | Not available | Upstream | -486 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -812 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -488 |
Matrix_156 | POC1 | Not available | Upstream | -814 |
| | | Upstream | -815 |
Matrix_181 | Dof5.7 | Not available | Downstream | 2282 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -248 |
Matrix_186 | FHY3 | Not available | Upstream | -247 |
Matrix_188 | SPL4 | Not available | Upstream | -1769 |
| | | Upstream | -1772 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -812 |
| | | Upstream | -813 |
| | | Upstream | -817 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -813 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_209 | RAP2.6 | Not available | Upstream | -488 |
Matrix_214 | AP1 | Not available | Upstream | -813 |
| | | Upstream | -814 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -812 |
| | | Upstream | -813 |
Matrix_224 | ERF1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_234 | RAP2.3 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1720 |
| | | Upstream | -1721 |
Matrix_247 | PIF3 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_252 | RAP2.6 | Not available | Upstream | -486 |
Matrix_261 | ATERF-1 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_264 | ATAREB1 | Not available | Upstream | -812 |
| | | Upstream | -813 |
| | | Upstream | -816 |
Matrix_277 | RAP2.6 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_285 | DDF1 | Not available | Upstream | -488 |
| | | Upstream | -489 |
| | | Upstream | -1723 |
Matrix_287 | ERF2 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1721 |
Matrix_288 | RAP2.3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1341 |
| | | Upstream | -1342 |
| | | Upstream | -1722 |
Matrix_295 | ERF1 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_296 | GBF2 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -815 |
| | | Upstream | -816 |
| | | Upstream | -817 |
Matrix_301 | PIL5 | Not available | Upstream | -817 |
Matrix_307 | RGL2;RGL3 | Not available | Upstream | -1769 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_331 | GBF1 | Not available | Upstream | -814 |
| | | Upstream | -815 |
| | | Upstream | -816 |
| | | Upstream | -817 |
Matrix_332 | SPT;ALC | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_334 | AT3G23230 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_338 | AP2 | Not available | Upstream | -813 |
Matrix_339 | bHLH104 | Not available | Upstream | -815 |
Matrix_343 | AT2G33710 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1721 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_356 | PRR5 | Not available | Upstream | -809 |
| | | Upstream | -813 |
Matrix_360 | ORA59 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_363 | RAP2.3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1341 |
| | | Upstream | -1342 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -487 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Downstream | 2226 |
| | | Upstream | -487 |
Matrix_378 | ATERF1 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1340 |
| | | Upstream | -1341 |
| | | Upstream | -1721 |
Matrix_388 | SNZ;SMZ;TOE2 | Not available | Upstream | -847 |
| | | Upstream | -848 |
Matrix_389 | ILR3 | Not available | Upstream | -815 |
| | | Upstream | -816 |
Matrix_403 | BZR1 | Not available | Upstream | -813 |
| | | Upstream | -814 |
Matrix_405 | DREB2C | Not available | Upstream | -388 |
Matrix_406 | ATERF-7 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_409 | DEAR3 | Not available | Upstream | -487 |
Matrix_41 | anac058 | Not available | Intron | 844 |
| | | Intron | 843 |
Matrix_414 | AGL15 | Not available | Upstream | -617 |
| | | Upstream | -708 |
Matrix_420 | ANAC58 | Not available | Intron | 845 |
| | | Intron | 844 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_443 | AGL15 | Not available | Upstream | -813 |
| | | Upstream | -814 |
Matrix_45 | DRN | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_462 | ATERF-8 | Not available | Upstream | -488 |
| | | Upstream | -489 |
| | | Upstream | -1723 |
Matrix_472 | ZN_C2_H2 | Not available | Upstream | -388 |
Matrix_473 | RRTF1 | Not available | Upstream | -486 |
| | | Upstream | -487 |
| | | Upstream | -1340 |
| | | Upstream | -1341 |
| | | Upstream | -1721 |
Matrix_48 | PI | Not available | Downstream | 2283 |
Matrix_480 | BES1 | Not available | Upstream | -814 |
| | | Upstream | -815 |
Matrix_484 | ATERF13 | Not available | Upstream | -488 |
| | | Upstream | -489 |
Matrix_488 | ABF1 | Not available | Upstream | -807 |
| | | Upstream | -808 |
| | | Upstream | -815 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_517 | ERF12 | Not available | Upstream | -488 |
| | | Upstream | -489 |
| | | Upstream | -1720 |
Matrix_55 | PIF3 | Not available | Upstream | -814 |
| | | Upstream | -815 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -487 |
| | | Upstream | -488 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -816 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -816 |
Matrix_7 | PIF4 | Not available | Upstream | -815 |
| | | Upstream | -816 |
| | | Upstream | -817 |
| | | Upstream | -818 |
Matrix_77 | PRR5 | Not available | Upstream | -814 |
| | | Upstream | -815 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Matrix_91 | CRF3 | Not available | Upstream | -487 |
| | | Upstream | -488 |
| | | Upstream | -1722 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -400 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Intron | 959 |
| | | Upstream | -403 |
Motif_145 | MYCATERD1 | MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motif | Downstream | 2395 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Downstream | 2266 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -807 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Downstream | 2100 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -817 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -806 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 2395 |
| | | Downstream | 2239 |
| | | Upstream | -817 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -815 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Downstream | 2101 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -250 |
| | | Upstream | -816 |
| | | Upstream | -817 |
Motif_22 | RYREPEATLEGUMINBOX | RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean | Downstream | 2236 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Upstream | -526 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -815 |
| | | Upstream | -817 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -251 |
| | | Upstream | -253 |
| | | Upstream | -817 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -955 |
Motif_278 | CELLCYCLESC | cell cycle box found in URS2 (-940/-200) of HO gene of S.cerevisiae; cell-cycle-specific activation of transcription | Downstream | 2093 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -972 |
| | | Upstream | -1546 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -815 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Downstream | 2230 |
| | | Upstream | -858 |
Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Downstream | 2223 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -808 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -489 |
Motif_314 | HY5AT | G box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotyl | Upstream | -814 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -250 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -973 |
| | | Upstream | -1545 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -817 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -953 |
| | | Upstream | -1232 |
Motif_382 | CATATGGMSAUR | Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | Downstream | 2239 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -391 |
| | | Upstream | -873 |
Motif_447 | AtMYC2 BS in RD22;PIF4 | Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 2395 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -816 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Downstream | 2339 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -496 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 845 |
| | | Upstream | -253 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -32 |
Motif_511 | RYREPEATGMGY2 | RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2) | Downstream | 2236 |
Motif_530 | CPBCSPOR | The sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) gene | Upstream | -961 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -815 |
Motif_544 | CACGCAATGMGH3 | Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein | Intron | 843 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -841 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -815 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -715 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Downstream | 2339 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -402 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -815 |
| | | Upstream | -818 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -815 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Downstream | 2397 |
| | | Downstream | 2235 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -814 |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | Upstream | -950 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -870 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Downstream | 2399 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 2358 |
| | | Downstream | 2099 |
| | | Downstream | 2090 |
| | | Upstream | -32 |
| | | Upstream | -471 |
| | | Upstream | -864 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -1543 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 2090 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -561 |
| | | Upstream | -563 |
| | | Upstream | -704 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -818 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Intron | 958 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -814 |