View conserved binding sites


Gene
CM00006G03810
Description
No description available
Alias
MELO3C006287;MELO3C006287T1
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-57
Upstream-139
Matrix_119RRTF1Not availableUpstream-245
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-3
Matrix_151ASIL1Not availableUpstream-143
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-211
Matrix_171LBD3;LBD4Not availableUpstream-58
Upstream-59
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-148
Upstream-151
Upstream-213
Upstream-257
Matrix_181Dof5.7Not availableUpstream-333
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-167
Matrix_186FHY3Not availableUpstream-166
Matrix_224ERF1Not availableUpstream-242
Matrix_234RAP2.3Not availableUpstream-244
Matrix_252RAP2.6Not availableUpstream-244
Matrix_269FHY3/FAR1Not availableUpstream-73
Matrix_295ERF1Not availableUpstream-243
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-58
Upstream-59
Matrix_343AT2G33710Not availableUpstream-244
Matrix_355ERF10;ERF11Not availableUpstream-58
Upstream-59
Matrix_360ORA59Not availableUpstream-243
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-59
Upstream-60
Matrix_378ATERF1Not availableUpstream-244
Matrix_401MYB55Not availableUpstream-216
Upstream-260
Upstream-287
Matrix_406ATERF-7Not availableUpstream-243
Matrix_409DEAR3Not availableUpstream-212
Matrix_426CRF1;CRF2Not availableUpstream-60
Upstream-61
Upstream-245
Matrix_448ATERF6Not availableUpstream-143
Matrix_45DRNNot availableUpstream-243
Matrix_455MYB111Not availableUpstream-260
Matrix_473RRTF1Not availableUpstream-244
Matrix_476bHLH115;bHLH34Not availableUpstream-169
Matrix_48PINot availableUpstream-49
Upstream-50
Upstream-85
Upstream-86
Upstream-151
Matrix_480BES1Not availableUpstream-168
Matrix_484ATERF13Not availableUpstream-243
Matrix_493AT1G22985;AT1G71130Not availableUpstream-59
Upstream-60
Upstream-143
Upstream-144
Matrix_50ATERF14;AT5G43410Not availableUpstream-242
Matrix_506DRNL;ATERF-4Not availableUpstream-60
Upstream-61
Upstream-245
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-151
Upstream-213
Upstream-257
Matrix_53MYC3Not availableUpstream-170
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-58
Upstream-59
Matrix_77PRR5Not availableUpstream-166
Matrix_80BIM1Not availableUpstream-169
Matrix_91CRF3Not availableUpstream-59
Upstream-60
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-1081
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-146
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-169
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-243
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-169
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-163
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-75
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-1925
Motif_686LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-1351
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-68