Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -57 |
| | | Upstream | -139 |
Matrix_119 | RRTF1 | Not available | Upstream | -245 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -3 |
Matrix_151 | ASIL1 | Not available | Upstream | -143 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -211 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -58 |
| | | Upstream | -59 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -148 |
| | | Upstream | -151 |
| | | Upstream | -213 |
| | | Upstream | -257 |
Matrix_181 | Dof5.7 | Not available | Upstream | -333 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -167 |
Matrix_186 | FHY3 | Not available | Upstream | -166 |
Matrix_224 | ERF1 | Not available | Upstream | -242 |
Matrix_234 | RAP2.3 | Not available | Upstream | -244 |
Matrix_252 | RAP2.6 | Not available | Upstream | -244 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -73 |
Matrix_295 | ERF1 | Not available | Upstream | -243 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -58 |
| | | Upstream | -59 |
Matrix_343 | AT2G33710 | Not available | Upstream | -244 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -58 |
| | | Upstream | -59 |
Matrix_360 | ORA59 | Not available | Upstream | -243 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -59 |
| | | Upstream | -60 |
Matrix_378 | ATERF1 | Not available | Upstream | -244 |
Matrix_401 | MYB55 | Not available | Upstream | -216 |
| | | Upstream | -260 |
| | | Upstream | -287 |
Matrix_406 | ATERF-7 | Not available | Upstream | -243 |
Matrix_409 | DEAR3 | Not available | Upstream | -212 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -60 |
| | | Upstream | -61 |
| | | Upstream | -245 |
Matrix_448 | ATERF6 | Not available | Upstream | -143 |
Matrix_45 | DRN | Not available | Upstream | -243 |
Matrix_455 | MYB111 | Not available | Upstream | -260 |
Matrix_473 | RRTF1 | Not available | Upstream | -244 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -169 |
Matrix_48 | PI | Not available | Upstream | -49 |
| | | Upstream | -50 |
| | | Upstream | -85 |
| | | Upstream | -86 |
| | | Upstream | -151 |
Matrix_480 | BES1 | Not available | Upstream | -168 |
Matrix_484 | ATERF13 | Not available | Upstream | -243 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -59 |
| | | Upstream | -60 |
| | | Upstream | -143 |
| | | Upstream | -144 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -242 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -60 |
| | | Upstream | -61 |
| | | Upstream | -245 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -151 |
| | | Upstream | -213 |
| | | Upstream | -257 |
Matrix_53 | MYC3 | Not available | Upstream | -170 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -58 |
| | | Upstream | -59 |
Matrix_77 | PRR5 | Not available | Upstream | -166 |
Matrix_80 | BIM1 | Not available | Upstream | -169 |
Matrix_91 | CRF3 | Not available | Upstream | -59 |
| | | Upstream | -60 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -1081 |
Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | Upstream | -146 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -169 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -243 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -169 |
Motif_357 | NTBBF1ARROLB | NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction | Upstream | -163 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -75 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -1925 |
Motif_686 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | Upstream | -1351 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -68 |