Matrix_104 | PI | Not available | Upstream | -1488 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -270 |
Matrix_113 | ABI5 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_129 | ABF1 | Not available | Upstream | -271 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -267 |
Matrix_156 | POC1 | Not available | Upstream | -270 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -1486 |
Matrix_214 | AP1 | Not available | Upstream | -269 |
Matrix_233 | MYC3 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_24 | POC1 | Not available | Upstream | -267 |
Matrix_247 | PIF3 | Not available | Upstream | -271 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -142 |
| | | Upstream | -213 |
Matrix_296 | GBF2 | Not available | Upstream | -271 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -271 |
Matrix_332 | SPT;ALC | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_338 | AP2 | Not available | Upstream | -1486 |
Matrix_345 | POC1 | Not available | Upstream | -268 |
Matrix_356 | PRR5 | Not available | Upstream | -1482 |
Matrix_359 | FLC | Not available | Upstream | -269 |
Matrix_38 | SPL14 | Not available | Upstream | -303 |
Matrix_403 | BZR1 | Not available | Upstream | -269 |
Matrix_443 | AGL15 | Not available | Upstream | -1487 |
Matrix_55 | PIF3 | Not available | Upstream | -270 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_64 | PIF5 | Not available | Upstream | -271 |
| | | Upstream | -272 |
Matrix_77 | PRR5 | Not available | Upstream | -270 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -1418 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -379 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -272 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -272 |
| | | Upstream | -386 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -271 |
| | | Upstream | -272 |
| | | Upstream | -984 |
| | | Upstream | -1490 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -309 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -270 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -272 |
| | | Upstream | -1064 |
| | | Upstream | -1550 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -1418 |
| | | Upstream | -1420 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -271 |
| | | Upstream | -272 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -271 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -386 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -388 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1419 |
| | | Upstream | -1421 |
| | | Upstream | -1423 |
| | | Upstream | -1425 |
| | | Upstream | -1427 |