View conserved binding sites


Gene
AT4G34860
Description
Plant neutral invertase family protein
Alias
A/N-InvB
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-723
Upstream-990
Upstream-991
Matrix_105SPL14Not availableUpstream-724
Matrix_113ABI5Not availableUpstream-725
Upstream-992
Upstream-993
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-987
Matrix_122ABF1;AREB2Not availableUpstream-724
Upstream-991
Upstream-992
Matrix_129ABF1Not availableUpstream-724
Upstream-991
Upstream-992
Matrix_134ABF1Not availableUpstream-991
Matrix_145GBF4;AT5G44080Not availableUpstream-725
Upstream-992
Upstream-993
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-720
Matrix_156POC1Not availableUpstream-990
Matrix_214AP1Not availableUpstream-722
Upstream-989
Upstream-990
Matrix_232TCP23Not availableUpstream-718
Matrix_240AT4G29000Not availableUpstream-13
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-721
Upstream-988
Upstream-989
Upstream-1971
Matrix_264ATAREB1Not availableUpstream-724
Upstream-991
Upstream-992
Matrix_301PIL5Not availableUpstream-725
Matrix_307RGL2;RGL3Not availableUpstream-730
Matrix_342SPL14Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon ResonanceUpstream-724
Matrix_345POC1Not availableUpstream-987
Upstream-988
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-1975
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-1757
Matrix_38SPL14Not availableUpstream-728
Matrix_403BZR1Not availableUpstream-722
Upstream-989
Upstream-990
Matrix_415WRKY27Not availableUpstream-721
Matrix_438AtbZIP63Not availableUpstream-991
Matrix_443AGL15Not availableUpstream-722
Upstream-989
Upstream-990
Matrix_480BES1Not availableUpstream-990
Upstream-991
Matrix_505GATA8Not availableUpstream-449
Matrix_55PIF3Not availableUpstream-723
Upstream-990
Upstream-991
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-22
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-725
Upstream-993
Upstream-1975
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-993
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-992
Upstream-993
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-818
Motif_244ABRE-like binding site motifNot availableUpstream-723
Upstream-725
Upstream-991
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-993
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-982
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-868
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-993
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-867
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-984
Motif_419MYB4 binding site motifNot availableUpstream-982
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-724
Upstream-992
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-995
Motif_511RYREPEATGMGY2RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)Upstream-818
Motif_533Bellringer/replumless/pennywise BS3 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1111
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-818
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-49
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-982
Motif_673Bellringer/replumless/pennywise BS2 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1111
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-654