InterPro domains associated with a binding site

Binding site
Motif_97
Name
E2Fc;E2Fd
Description
The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants
#Associated genes
548
#Associated InterPro terms
306

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InterPro Description #Associated genes ath bra cme egr gma ptr ppe sly stu vvi
IPR027417P-loop containing nucleoside triphosphate hydrolase104 (18.98%)598914161210912
IPR012340Nucleic acid-binding, OB-fold73 (13.32%)37751097988
IPR001208Mini-chromosome maintenance, DNA-dependent ATPase64 (11.68%)36651086776
IPR027925MCM N-terminal domain62 (11.31%)35641086767
IPR018525Mini-chromosome maintenance, conserved site56 (10.22%)25541075666
IPR003593AAA+ ATPase domain39 (7.12%)4413645444
IPR000679Zinc finger, GATA-type23 (4.20%)3421221332
IPR013088Zinc finger, NHR/GATA-type23 (4.20%)3421221332
IPR013083Zinc finger, RING/FYVE/PHD-type22 (4.01%)1223235112
IPR000719Protein kinase domain21 (3.83%)0311823111
IPR011009Protein kinase-like domain21 (3.83%)0311823111
IPR001680WD40 repeat20 (3.65%)1112124224
IPR017986WD40-repeat-containing domain20 (3.65%)1112124224
IPR015943WD40/YVTN repeat-like-containing domain20 (3.65%)1112124224
IPR011990Tetratricopeptide-like helical19 (3.47%)1322313112
IPR019775WD40 repeat, conserved site19 (3.47%)1112124223
IPR013210Leucine-rich repeat-containing N-terminal, type 216 (2.92%)0201712111
IPR001611Leucine-rich repeat15 (2.74%)0301611111
IPR011011Zinc finger, FYVE/PHD-type15 (2.74%)1212214011
IPR001965Zinc finger, PHD-type15 (2.74%)1212214110
IPR003591Leucine-rich repeat, typical subtype14 (2.55%)0201611111
IPR002290Serine/threonine- / dual specificity protein kinase, catalytic domain14 (2.55%)0210612110
IPR008271Serine/threonine-protein kinase, active site14 (2.55%)0210612110
IPR019787Zinc finger, PHD-finger14 (2.55%)1212214010
IPR001810F-box domain13 (2.37%)1012322110
IPR004039Rubredoxin-type fold13 (2.37%)0021420211
IPR013763Cyclin-like12 (2.19%)1010232111
IPR008048DNA replication licensing factor Mcm12 (2.19%)1111221111
IPR008049DNA replication licensing factor Mcm612 (2.19%)0211211211
IPR019786Zinc finger, PHD-type, conserved site12 (2.19%)1111214010
IPR001025Bromo adjacent homology (BAH) domain11 (2.01%)1201401101
IPR004367Cyclin, C-terminal domain10 (1.82%)1010032111
IPR006671Cyclin, N-terminal10 (1.82%)1010032111
IPR008046DNA replication licensing factor Mcm310 (1.82%)1200211111
IPR019734Tetratricopeptide repeat10 (1.82%)1211202001
IPR003959ATPase, AAA-type, core9 (1.64%)1101311001
IPR014939CDT1 Geminin-binding domain-like9 (1.64%)0231201000
IPR008045DNA replication licensing factor Mcm29 (1.64%)0011211111
IPR000782FAS1 domain9 (1.64%)0010231110
IPR006818Histone chaperone, ASF1-like9 (1.64%)0121002111
IPR011989Armadillo-like helical8 (1.46%)0011123000
IPR016024Armadillo-type fold8 (1.46%)0011123000
IPR008047Mini-chromosome maintenance complex protein 48 (1.46%)0011210111
IPR002885Pentatricopeptide repeat8 (1.46%)0101011112
IPR014729Rossmann-like alpha/beta/alpha sandwich fold8 (1.46%)0011302001
IPR001214SET domain8 (1.46%)1000231001
IPR026489CXC domain7 (1.28%)1000221001
IPR019448EEIG1/EHBP1 N-terminal domain7 (1.28%)1100011111
IPR022052Histone-binding protein RBBP4, N-terminal7 (1.28%)1001011111
IPR009072Histone-fold7 (1.28%)0021100120
IPR025778Histone-lysine N-methyltransferase, EZ7 (1.28%)1000221001
IPR005647Meiotic nuclear division protein 17 (1.28%)0002110111
IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain7 (1.28%)0101211001
IPR024813TONSOKU7 (1.28%)1111201000
IPR013026Tetratricopeptide repeat-containing domain7 (1.28%)0111201001
IPR001878Zinc finger, CCHC-type7 (1.28%)0101011111
IPR007185DNA polymerase alpha/epsilon, subunit B6 (1.09%)0002001111
IPR008050DNA replication licensing factor Mcm76 (1.09%)0010011111
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal6 (1.09%)0001021002
IPR020472G-protein beta WD-40 repeat6 (1.09%)1001010111
IPR001650Helicase, C-terminal6 (1.09%)0001021002
IPR014001Helicase, superfamily 1/2, ATP-binding domain6 (1.09%)0001021002
IPR014013Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type6 (1.09%)0020011110
IPR003590Leucine-rich repeat, ribonuclease inhibitor subtype6 (1.09%)1101201000
IPR013940Meiosis specific protein SPO226 (1.09%)0110201001
IPR012334Pectin lyase fold6 (1.09%)1300001001
IPR011050Pectin lyase fold/virulence factor6 (1.09%)1300001001
IPR012923Replication fork protection component Swi36 (1.09%)0001011111
IPR000571Zinc finger, CCCH-type6 (1.09%)0000300111
IPR001841Zinc finger, RING-type6 (1.09%)0011011101
IPR001471AP2/ERF domain5 (0.91%)0000210110
IPR001525C-5 cytosine methyltransferase5 (0.91%)0100200101
IPR011006CheY-like superfamily5 (0.91%)1201000001
IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminal5 (0.91%)0001210001
IPR013320Concanavalin A-like lectin/glucanase, subgroup5 (0.91%)0100200110
IPR022702DNA (cytosine-5)-methyltransferase 1, replication foci domain5 (0.91%)0100200101
IPR018117DNA methylase, C-5 cytosine-specific, active site5 (0.91%)0100200101
IPR013632DNA recombination and repair protein Rad51, C-terminal5 (0.91%)1011101000
IPR020588DNA recombination/repair protein RecA-like, ATP-binding domain5 (0.91%)1011101000
IPR016177DNA-binding domain5 (0.91%)0000210110
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site5 (0.91%)0001010111
IPR011034Formyl transferase, C-terminal-like5 (0.91%)1101001001
IPR005339GINS complex, subunit Psf15 (0.91%)1101000110
IPR001674GMP synthase, C-terminal5 (0.91%)0011200001
IPR025777GMP synthetase ATP pyrophosphatase domain5 (0.91%)0011200001
IPR017926Glutamine amidotransferase5 (0.91%)0011200001
IPR000743Glycoside hydrolase, family 285 (0.91%)1200001001
IPR003180Methylpurine-DNA glycosylase (MPG)5 (0.91%)1101001001
IPR019140Mini-chromosome maintenance complex-binding protein5 (0.91%)0011200001
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type5 (0.91%)0110000111
IPR020795Origin recognition complex, subunit 35 (0.91%)1101011000
IPR006626Parallel beta-helix repeat5 (0.91%)1200001001
IPR003021Rad1/Rec1/Rad175 (0.91%)0110000111
IPR013721STAG5 (0.91%)0011120000
IPR001789Signal transduction response regulator, receiver domain5 (0.91%)1201000001
IPR001606ARID/BRIGHT DNA-binding domain4 (0.73%)0000021001
IPR006555ATP-dependent helicase, C-terminal4 (0.73%)0000011110
IPR001962Asparagine synthase4 (0.73%)0010200001
IPR010614DEAD24 (0.73%)0000011110
IPR005061Domain of unknown function DUF292, eukaryotic4 (0.73%)0000210001
IPR022955GMP synthase4 (0.73%)0011200000
IPR004739GMP synthase, N-terminal4 (0.73%)0011200000
IPR006554Helicase-like, DEXD box c2 type4 (0.73%)0000011110
IPR007125Histone core4 (0.73%)0021000010
IPR025875Leucine rich repeat 44 (0.73%)0101000110
IPR001087Lipase, GDSL4 (0.73%)0000101110
IPR008521Magnesium transporter NIPA4 (0.73%)0010100101
IPR022100Protein of unknown function DUF36394 (0.73%)0010011001
IPR013831SGNH hydrolase-type esterase domain4 (0.73%)0000101110
IPR020839Stromalin conservative domain4 (0.73%)0011110000
IPR025659Tubby C-terminal-like domain4 (0.73%)0001111000
IPR000007Tubby, C-terminal4 (0.73%)0001111000
IPR018066Tubby, C-terminal, conserved site4 (0.73%)0001111000
IPR001279Beta-lactamase-like3 (0.55%)0011010000
IPR024639DNA polymerase epsilon subunit B, N-terminal3 (0.55%)0001000110
IPR014808DNA replication factor Dna2, N-terminal3 (0.55%)0001000110
IPR026851Dna23 (0.55%)0001000110
IPR018928Generative cell specific-1, HAP2-GCS13 (0.55%)0001010001
IPR001951Histone H43 (0.55%)0021000000
IPR019809Histone H4, conserved site3 (0.55%)0021000000
IPR011598Myc-type, basic helix-loop-helix (bHLH) domain3 (0.55%)0010200000
IPR020796Origin recognition complex, subunit 53 (0.55%)0000020001
IPR002610Peptidase S54, rhomboid3 (0.55%)0000210000
IPR022764Peptidase S54, rhomboid domain3 (0.55%)0000210000
IPR017441Protein kinase, ATP binding site3 (0.55%)0110010000
IPR013955Replication factor A, C-terminal3 (0.55%)0010000110
IPR007199Replication factor-A protein 1, N-terminal3 (0.55%)0010000110
IPR004591Replication factor-a protein 1 Rpa13 (0.55%)0010000110
IPR004179Sec63 domain3 (0.55%)0000011001
IPR003958Transcription factor CBF/NF-Y/archaeal histone3 (0.55%)0000100110
IPR011991Winged helix-turn-helix DNA-binding domain3 (0.55%)0100100001
IPR007087Zinc finger, C2H23 (0.55%)0000011001
IPR0200455'-3' exonuclease, C-terminal domain2 (0.36%)0001001000
IPR003439ABC transporter-like2 (0.36%)0000011000
IPR002912ACT domain2 (0.36%)1100000000
IPR005144ATP-cone2 (0.36%)0000000110
IPR008395Agenet-like domain2 (0.36%)0000020000
IPR009424Arabinogalactan peptide, AGP2 (0.36%)0000000110
IPR000225Armadillo2 (0.36%)0000011000
IPR001357BRCT domain2 (0.36%)0000001100
IPR011364Breast cancer type 1 susceptibility protein (BRCA1)2 (0.36%)0000001100
IPR003874CDC45 family2 (0.36%)0000100001
IPR004022DDT domain2 (0.36%)0000001010
IPR018501DDT domain superfamily2 (0.36%)0000001010
IPR018500DDT domain, subgroup2 (0.36%)0000001010
IPR004589DNA helicase, ATP-dependent, RecQ type2 (0.36%)0000010001
IPR000432DNA mismatch repair protein MutS, C-terminal2 (0.36%)0100000001
IPR007861DNA mismatch repair protein MutS, clamp2 (0.36%)0100000001
IPR007860DNA mismatch repair protein MutS, connector domain2 (0.36%)0100000001
IPR007696DNA mismatch repair protein MutS, core2 (0.36%)0100000001
IPR007695DNA mismatch repair protein MutS-like, N-terminal2 (0.36%)0100000001
IPR024647DNA polymerase alpha catalytic subunit, N-terminal domain2 (0.36%)0010001000
IPR013627DNA polymerase alpha, subunit B N-terminal2 (0.36%)0001000001
IPR023211DNA polymerase, palm domain2 (0.36%)0010001000
IPR011084DNA repair metallo-beta-lactamase2 (0.36%)0011000000
IPR006172DNA-directed DNA polymerase, family B2 (0.36%)0010001000
IPR017964DNA-directed DNA polymerase, family B, conserved site2 (0.36%)0010001000
IPR006133DNA-directed DNA polymerase, family B, exonuclease domain2 (0.36%)0010001000
IPR006134DNA-directed DNA polymerase, family B, multifunctional domain2 (0.36%)0010001000
IPR004578DNA-directed DNA polymerase, family B, pol22 (0.36%)0010001000
IPR001623DnaJ domain2 (0.36%)0001001000
IPR000949ELM2 domain2 (0.36%)0000020000
IPR008918Helix-hairpin-helix motif, class 22 (0.36%)0001001000
IPR001752Kinesin, motor domain2 (0.36%)0000000101
IPR019821Kinesin, motor region, conserved site2 (0.36%)0000000101
IPR027640Kinesin-like protein2 (0.36%)0000000101
IPR018289MULE transposase domain2 (0.36%)0100001000
IPR016196Major facilitator superfamily domain, general substrate transporter2 (0.36%)0000011000
IPR028009N-acetyltransferase ESCO, acetyl-transferase domain2 (0.36%)0000100100
IPR028005N-acetyltransferase ESCO, zinc-finger2 (0.36%)0000100100
IPR020793Origin recognition complex, subunit 12 (0.36%)1100000000
IPR022398Peptidase S8, subtilisin, His-active site2 (0.36%)0000011000
IPR023828Peptidase S8, subtilisin, Ser-active site2 (0.36%)0000011000
IPR015500Peptidase S8, subtilisin-related2 (0.36%)0000011000
IPR000209Peptidase S8/S53 domain2 (0.36%)0000011000
IPR000424Primosome PriB/single-strand DNA-binding2 (0.36%)0000011000
IPR009829Protein of unknown function DUF13952 (0.36%)0000001001
IPR007930Protein of unknown function DUF7242 (0.36%)0000020000
IPR014892Replication protein A, C-terminal2 (0.36%)0100000001
IPR028309Retinoblastoma protein family2 (0.36%)0000200000
IPR002720Retinoblastoma-associated protein, A-box2 (0.36%)0000200000
IPR002719Retinoblastoma-associated protein, B-box2 (0.36%)0000200000
IPR024599Retinoblastoma-associated protein, N-terminal2 (0.36%)0000200000
IPR012337Ribonuclease H-like domain2 (0.36%)0010001000
IPR008926Ribonucleotide reductase R1 subunit, N-terminal2 (0.36%)0000000110
IPR000788Ribonucleotide reductase large subunit, C-terminal2 (0.36%)0000000110
IPR013509Ribonucleotide reductase large subunit, N-terminal2 (0.36%)0000000110
IPR013346Ribonucleotide reductase, class I , alpha subunit2 (0.36%)0000000110
IPR001005SANT/Myb domain2 (0.36%)0000011000
IPR013105Tetratricopeptide TPR22 (0.36%)0000001001
IPR012336Thioredoxin-like fold2 (0.36%)0001010000
IPR014002Tudor-like, plant2 (0.36%)0000020000
IPR006085XPG N-terminal2 (0.36%)0001001000
IPR019974XPG conserved site2 (0.36%)0001001000
IPR006086XPG-I domain2 (0.36%)0001001000
IPR006084XPG/Rad2 endonuclease2 (0.36%)0001001000
IPR015088Zinc finger, DNA-directed DNA polymerase, family B, alpha2 (0.36%)0010001000
IPR006564Zinc finger, PMZ-type2 (0.36%)0100001000
IPR017907Zinc finger, RING-type, conserved site2 (0.36%)0000001100
IPR007527Zinc finger, SWIM-type2 (0.36%)0100001000
IPR026082ABC transporter A, ABCA1 (0.18%)0000010000
IPR011527ABC transporter type 1, transmembrane domain1 (0.18%)0000001000
IPR017871ABC transporter, conserved site1 (0.18%)0000010000
IPR001140ABC transporter, transmembrane domain1 (0.18%)0000001000
IPR017956AT hook, DNA-binding motif1 (0.18%)0000100000
IPR016181Acyl-CoA N-acyltransferase1 (0.18%)0000100000
IPR002068Alpha crystallin/Hsp20 domain1 (0.18%)0100000000
IPR002110Ankyrin repeat1 (0.18%)0010000000
IPR020683Ankyrin repeat-containing domain1 (0.18%)0010000000
IPR001461Aspartic peptidase1 (0.18%)0000010000
IPR021109Aspartic peptidase domain1 (0.18%)0000010000
IPR014733Barwin-like endoglucanase1 (0.18%)0000100000
IPR004827Basic-leucine zipper domain1 (0.18%)0000001000
IPR004324Biopterin transport-related protein BT11 (0.18%)0000010000
IPR010402CCT domain1 (0.18%)0001000000
IPR001251CRAL-TRIO domain1 (0.18%)0000010000
IPR011074CRAL/TRIO, N-terminal domain1 (0.18%)0000010000
IPR022043Chromatin assembly factor 1 subunit A1 (0.18%)0010000000
IPR013255Chromosome segregation protein Spc251 (0.18%)0010000000
IPR006593Cytochrome b561/ferric reductase transmembrane1 (0.18%)0000000001
IPR016151DNA mismatch repair protein MutS, N-terminal1 (0.18%)0000000001
IPR015536DNA mismatch repair protein MutS-homologue MSH61 (0.18%)0000000001
IPR002755DNA primase, small subunit1 (0.18%)0000010000
IPR014052DNA primase, small subunit, eukaryotic/archaeal1 (0.18%)0000010000
IPR007085DNA/pantothenate metabolism flavoprotein, C-terminal1 (0.18%)0000100000
IPR005018DOMON domain1 (0.18%)0000000001
IPR025486Domain of unknown function DUF43781 (0.18%)0100000000
IPR005491EMSY N-terminal1 (0.18%)0000000100
IPR002963Expansin1 (0.18%)0000100000
IPR007117Expansin, cellulose-binding-like domain1 (0.18%)0000100000
IPR007118Expansin/Lol pI1 (0.18%)0000100000
IPR007112Expansin/pollen allergen, DPBB domain1 (0.18%)0000100000
IPR009078Ferritin-like superfamily1 (0.18%)0000000001
IPR012900G-box binding, MFMR1 (0.18%)0000001000
IPR008013GATA-type transcription activator, N-terminal1 (0.18%)0000000001
IPR019378GDP-fucose protein O-fucosyltransferase1 (0.18%)0000001000
IPR021151GINS complex1 (0.18%)0001000000
IPR015916Galactose oxidase, beta-propeller1 (0.18%)0000001000
IPR005828General substrate transporter1 (0.18%)0000001000
IPR001296Glycosyl transferase, family 11 (0.18%)0000010000
IPR023214HAD-like domain1 (0.18%)0000000001
IPR006379HAD-superfamily hydrolase, subfamily IIB1 (0.18%)0000000001
IPR026003HEAT repeat associated with sister chromatid cohesion protein1 (0.18%)0000001000
IPR008978HSP20-like chaperone1 (0.18%)0100000000
IPR000232Heat shock factor (HSF)-type, DNA-binding1 (0.18%)0000100000
IPR027725Heat shock transcription factor family1 (0.18%)0000100000
IPR027709Heat shock transcription factor, plant1 (0.18%)0000100000
IPR009071High mobility group box domain1 (0.18%)0100000000
IPR000558Histone H2B1 (0.18%)0000000010
IPR015815Hydroxy monocarboxylic acid anion dehydrogenase, HIBADH-type1 (0.18%)0000010000
IPR006652Kelch repeat type 11 (0.18%)0000001000
IPR006553Leucine-rich repeat, cysteine-containing subtype1 (0.18%)0000010000
IPR002921Lipase, class 31 (0.18%)0000010000
IPR012094Lysidine-tRNA(Ile) synthetase1 (0.18%)0000001000
IPR012795Lysidine-tRNA(Ile) synthetase, N-terminal1 (0.18%)0000001000
IPR020846Major facilitator superfamily domain1 (0.18%)0000001000
IPR012301Malic enzyme, N-terminal domain1 (0.18%)0000000001
IPR012302Malic enzyme, NAD-binding1 (0.18%)0000000001
IPR015884Malic enzyme, conserved site1 (0.18%)0000000001
IPR001891Malic oxidoreductase1 (0.18%)0000000001
IPR003441NAC domain1 (0.18%)0000000001
IPR016040NAD(P)-binding domain1 (0.18%)0000000001
IPR022310NAD/GMP synthase1 (0.18%)0001000000
IPR024867Nuclear factor related to kappa-B-binding protein1 (0.18%)0000001000
IPR012677Nucleotide-binding, alpha-beta plait1 (0.18%)0000001000
IPR000313PWWP domain1 (0.18%)0000010000
IPR002343Paraneoplastic encephalomyelitis antigen1 (0.18%)0000001000
IPR006501Pectinesterase inhibitor domain1 (0.18%)0100000000
IPR018040Pectinesterase, active site1 (0.18%)0100000000
IPR000070Pectinesterase, catalytic1 (0.18%)0100000000
IPR021850Protein of unknown function DUF34531 (0.18%)0000001000
IPR008480Protein of unknown function DUF761, plant1 (0.18%)0000000010
IPR001697Pyruvate kinase1 (0.18%)0000000001
IPR015795Pyruvate kinase, C-terminal1 (0.18%)0000000001
IPR015794Pyruvate kinase, alpha/beta1 (0.18%)0000000001
IPR015793Pyruvate kinase, barrel1 (0.18%)0000000001
IPR015806Pyruvate kinase, beta-barrel insert domain1 (0.18%)0000000001
IPR011037Pyruvate kinase-like, insert domain1 (0.18%)0000000001
IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain1 (0.18%)0000000001
IPR000504RNA recognition motif domain1 (0.18%)0000001000
IPR026584Rad91 (0.18%)0000000001
IPR007268Rad9/Ddc11 (0.18%)0000000001
IPR003395RecF/RecN/SMC, N-terminal1 (0.18%)0000010000
IPR000358Ribonucleotide reductase small subunit1 (0.18%)0000000001
IPR012348Ribonucleotide reductase-related1 (0.18%)0000000001
IPR009009RlpA-like double-psi beta-barrel domain1 (0.18%)0000100000
IPR010935SMCs flexible hinge1 (0.18%)0000010000
IPR024986Sister chromatid cohesion C-terminal domain1 (0.18%)0000001000
IPR027132Structural maintenance of chromosomes protein 61 (0.18%)0000001000
IPR005829Sugar transporter, conserved site1 (0.18%)0000001000
IPR003663Sugar/inositol transporter1 (0.18%)0000001000
IPR024420TRAPP III complex, Trs851 (0.18%)0000100000
IPR001440Tetratricopeptide TPR11 (0.18%)0100000000
IPR004332Transposase, MuDR, plant1 (0.18%)0000001000
IPR003337Trehalose-phosphatase1 (0.18%)0000000001
IPR002999Tudor domain1 (0.18%)0010000000
IPR017340U1 small nuclear ribonucleoprotein C1 (0.18%)0000100000
IPR006016UspA1 (0.18%)0000001000
IPR007656Zein-binding domain1 (0.18%)0000010000
IPR000315Zinc finger, B-box1 (0.18%)0001000000
IPR015880Zinc finger, C2H2-like1 (0.18%)0000000001
IPR000690Zinc finger, C2H2-type matrin1 (0.18%)0000100000
IPR001876Zinc finger, RanBP2-type1 (0.18%)0100000000
IPR013085Zinc finger, U1-C type1 (0.18%)0000100000
IPR003604Zinc finger, U1-type1 (0.18%)0000100000
IPR011063tRNA(Ile)-lysidine/2-thiocytidine synthase1 (0.18%)0000001000